Andrea C. Vaiana - Computational Molecular Biophysics;University of Heidelberg;Computational Molecular Biophysics, University of Heidelberg

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Transient Non-local Interactions Dominate the Dynamics of Measles Virus NTAIL

Lillian Otteson,Gabor Nagy,John Kunkel,Gerdenis Kodis,Wenwei Zheng,Christophe Bignon,Sonia Longhi, Helmut Grubmüller,Andrea C Vaiana,Sara M Vaiana

bioRxiv the preprint server for biology (2024)

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Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Catherine L. Lawson,Andriy Kryshtafovych,Grigore D. Pintilie,Stephen K. Burley,Jiri Cerny,Vincent B. Chen,Paul Emsley,Alberto Gobbi,Andrzej Joachimiak,Sigrid Noreng,Michael G. Prisant,Randy J. Read,Jane S. Richardson,Alexis L. Rohou,Bohdan Schneider,Benjamin D. Sellers,Chenghua Shao, Elizabeth Sourial,Chris I. Williams,Christopher J. Williams, Ying Yang, Venkat Abbaraju,Pavel V. Afonine,Matthew L. Baker,Paul S. Bond,Tom L. Blundell,Tom Burnley,Arthur Campbell,Renzhi Cao,Jianlin Cheng,Grzegorz Chojnowski,K. D. Cowtan,Frank DiMaio,Reza Esmaeeli,Nabin Giri,Helmut Grubmueller,Soon Wen Hoh,Jie Hou,Corey F. Hryc,Carola Hunte,Maxim Igaev,Agnel P. Joseph,Wei-Chun Kao,Daisuke Kihara,Dilip Kumar,Lijun Lang, Sean Lin,Sai R. Maddhuri Venkata Subramaniya,Sumit Mittal,Arup Mondal,Nigel W. Moriarty,Andrew Muenks,Garib N. Murshudov,Robert A. Nicholls,Mateusz Olek,Colin M. Palmer,Alberto Perez,Emmi Pohjolainen,Karunakar R. Pothula,Christopher N. Rowley,Daipayan Sarkar,Luisa U. Schaefer,Christopher J. Schlicksup,Gunnar F. Schroeder,Mrinal Shekhar,Dong Si,Abhishek Singharoy,Oleg V. Sobolev,Genki Terashi,Andrea C. Vaiana,Sundeep C. Vedithi,Jacob Verburgt,Xiao Wang,Rangana Warshamanage,Martyn D. Winn,Simone Weyand,Keitaro Yamashita,Minglei Zhao,Michael F. Schmid,Helen M. Berman,Wah Chiu

NATURE METHODSno. 7 (2024)

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How dangling ends of disordered peptides affect photoinduced electron transfer relaxation

Gabor Nagy,Wenwei Zheng,Andrea C Vaiana,Crystal Ottoway,Aaron C Globisch,Sara M Vaiana,Helmut Grubmuller

Biophysical Journal（2023）

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Discrimination Between Cyclic-Nucleotides by Cyclic-Nucleotide Gated Ion Channels

Andrea C. Vaiana,Yangang Pan,Emmi Pohjolainen,Helmut Grubmuller,Simon Scheuring

BIOPHYSICAL JOURNALno. 3 (2023): 518A-518A

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Role of Disordered Regions Beyond the Binding Motif of the Measles Virus N TAIL

Gabor Nagy,Lillian Otteson,John Kunkel,Gerdenis Kodis, Wenwei Zhend,Christophe Bignon,Sonia Longhi,Andrea C. Vaiana,Helmut Grubmuller,Sara M. Vaiana

Biophysical journal（2023）

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Mechanism by which a cyclic-nucleotide gated ion channel discriminates between nucleotides revealed by AFM force spectroscopy and molecular dynamics simulations

Yangang Pan,Philipp Schmidpeter,Emmi Pohjolainen,Andrea C. Vaiana,Helmut Grubmuller,Crina M. Nimigean,Simon Scheuring

Biophysical Journal（2022）

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Free Energy along Transition Pathways from Correlation Based Sampling

Emmi Pohjolainen,Maxim Igaev,Helmut Grubmuller,Andrea C. Vaiana

Biophysical journal（2022）

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Distant electrostatic interactions dominate the dynamics of the disordered measles virus N_TAIL

John Kunkel,Gerdenis Kodis,Gabor Nagy,Christophe Bignon,Lillian Otteson,Sonia Longhi,Andrea C. Vaiana,Helmut Grubmuller,Wenwei Zheng,Sara M. Vaiana

Biophysical Journal（2022）

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Cryo-EM Model Validation Recommendations Based on Outcomes of the 2019 EMDataResource Challenge

Nature methods（2021）

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Dynamical Heterogeneity in the Measles Virus IDP N_TAIL in its Free and Bound States

John Kunkel,Gerdenis Kodis,Gabor Nagy,Christophe Bignon,Sonia Longhi,Andrea C. Vaiana,Helmut Grubmuller,Wenwei Zheng,Sara M. Vaiana

BIOPHYSICAL JOURNAL（2021）

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