Daipayan Sarkar

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个人简介

My research goal is to develop algorithms and pipelines to perform multiscale integrative modeling to understand and predict molecular-to-systems level biological behavior.

研究兴趣

论文共 60 篇作者统计合作学者相似作者

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Comparative Analysis of Planar and Capsule Morphologies of Bacterial Microcompartment Shell Protein Assemblies

Saad Raza,Daipayan Sarkar,Josh V. Vermaas

BIOPHYSICAL JOURNALno. 3 (2024): 57A-57A

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Decoding the Role of Lipid Headgroups in Membrane Biomechanics

Fathima T. Doole,Chun Kit Chan,Daipayan Sarkar,Constantin Job,Abhishek Singharoy,Andrey V. Struts,Michael F. Brown

BIOPHYSICAL JOURNALno. 3 (2024): 233A-233A

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Advancing Thermostability of the Key Photorespiratory Enzyme Glycerate 3-Kinase by Structure-Based Recombination

Ludmila V Roze,Anna Antoniak,Daipayan Sarkar, Aaron H Liepman,Mauricio Tejera-Nieves,Josh V Vermaas,Berkley J Walker

Plant biotechnology journal (2024)

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Comparative Pore Structure and Dynamics for Bacterial Microcompartment Shell Protein Assemblies in Sheets or Shells

Saad Raza,Daipayan Sarkar,Leanne Jade G. Chan, Joshua Mae,Markus Sutter,Christopher J. Petzold,Cheryl A. Kerfeld,Corie Y. Ralston,Sayan Gupta,Josh V. Vermaas

ACS OMEGAno. 33 (2024): 35503-35514

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Adaptative Survival of Aspergillus Fumigatus to Echinocandins Arises from Cell Wall Remodeling Beyond Β−1,3-Glucan Synthesis Inhibition

Malitha C. Dickwella Widanage,Isha Gautam,Daipayan Sarkar,Frederic Mentink-Vigier,Josh V. Vermaas,Shi-You Ding,Andrew S. Lipton,Thierry Fontaine,Jean-Paul Latge,Ping Wang,Tuo Wang

NATURE COMMUNICATIONSno. 1 (2024)

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Comparing Photosynthetic Metabolite Free Energy and Permeability Across Bacterial Microcompartment Shell Proteins

Daipayan Sarkar,Markus Sutter, Cheryl A. Kerfeld, Josh V. Vermaas

BIOPHYSICAL JOURNALno. 3 (2024): 247A-247A

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Atomic View of Photosynthetic Metabolite Permeability Pathways and Confinement in Synthetic Carboxysome Shells

Daipayan Sarkar,Christopher Maffeo,Markus Sutter,Aleksei Aksimentiev, Cheryl A Kerfeld, Josh V Vermaas

Proceedings of the National Academy of Sciences of the United States of Americano. 45 (2024): e2402277121-e2402277121

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SimpleARBD: A Multiscale Parametrization, Simulation, and Visualization Framework Integrating Atom-Resolved Brownian and Molecular Dynamics Models

Chun Kit Chan, Christopher M. Maffeo,Daipayan Sarkar,Aleksei Aksimentiev,Emad Tajkhorshid,Abhishek Singharoy

BIOPHYSICAL JOURNALno. 3 (2024): 425A-425A

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Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Catherine L. Lawson,Andriy Kryshtafovych,Grigore D. Pintilie,Stephen K. Burley,Jiri Cerny,Vincent B. Chen,Paul Emsley,Alberto Gobbi,Andrzej Joachimiak,Sigrid Noreng,Michael G. Prisant,Randy J. Read,Jane S. Richardson,Alexis L. Rohou,Bohdan Schneider,Benjamin D. Sellers,Chenghua Shao, Elizabeth Sourial,Chris I. Williams,Christopher J. Williams, Ying Yang, Venkat Abbaraju,Pavel V. Afonine,Matthew L. Baker,Paul S. Bond,Tom L. Blundell,Tom Burnley,Arthur Campbell,Renzhi Cao,Jianlin Cheng,Grzegorz Chojnowski,K. D. Cowtan,Frank DiMaio,Reza Esmaeeli,Nabin Giri,Helmut Grubmueller,Soon Wen Hoh,Jie Hou,Corey F. Hryc,Carola Hunte,Maxim Igaev,Agnel P. Joseph,Wei-Chun Kao,Daisuke Kihara,Dilip Kumar,Lijun Lang, Sean Lin,Sai R. Maddhuri Venkata Subramaniya,Sumit Mittal,Arup Mondal,Nigel W. Moriarty,Andrew Muenks,Garib N. Murshudov,Robert A. Nicholls,Mateusz Olek,Colin M. Palmer,Alberto Perez,Emmi Pohjolainen,Karunakar R. Pothula,Christopher N. Rowley,Daipayan Sarkar,Luisa U. Schaefer,Christopher J. Schlicksup,Gunnar F. Schroeder,Mrinal Shekhar,Dong Si,Abhishek Singharoy,Oleg V. Sobolev,Genki Terashi,Andrea C. Vaiana,Sundeep C. Vedithi,Jacob Verburgt,Xiao Wang,Rangana Warshamanage,Martyn D. Winn,Simone Weyand,Keitaro Yamashita,Minglei Zhao,Michael F. Schmid,Helen M. Berman,Wah Chiu

NATURE METHODSno. 7 (2024)

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Tackling the Many Ferredoxins Problem in Chlamydomonas Reinhardtii with Molecular Simulations

Daipayan Sarkar, Christoph W. A. Fischer, Stefan Schmollinger,Daniela Strenkert, Josh V. Vermaas

BIOPHYSICAL JOURNALno. 3 (2024): 248A-248A

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论文共 60 篇作者统计合作学者相似作者