基本信息
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Career Trajectory
Bio
As a bioinformatician with a molecular biologists background, my first project was to set up from scratch what was going to become the PlantCARE database and brought me to focus my interest on gene expression. I then have been working on the annotation of the genomic sequences that contributed to the ESSA projects for the sequencing of Arabidopsis were the first genome duplications in Arabidopsis were shown. This involved next to some dataming, a lot of manual annotation of raw genomic sequences and genes, correcting faulty annotation done by automated systems that reported poor results at that time. I since then collaborated and still now provide an input in the development and enhancement of the Eugene gene prediction platform that performs now among the best. Over the years I have kept both interest. I'm still maintaining the PlantCARE database, that became part of the PlaNet project aiming at interconnecting databases on different aspects of plant genomics, while, on the other hand, I'm involved in the annotation of new upcoming plant genomes, which brough us to adapt the Eugene platform to other plant genomes than Arabidopsis thaliana. Now I try to combine both, as more plant genomes become available and comparative methods enable more reliable in silico promoter analyses. This means that from a raw genomic sequences I follow the whole pipe line from genome annotation, to the extraction of the data necessary to study promoter sequences and find clues to decifer potential co-expressed genes in networks.
Research Interests
Papers共 144 篇Author StatisticsCo-AuthorSimilar Experts
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Insect molecular biology (2024)
Peter De Rijk, Tijs Watzeels,Fahri Küçükali,Jasper Van Dongen,Júlia Faura,Patrick Willems, Lara De Deyn,Lena Duchateau, Carolin Grones,Thomas Eekhout,Tim De Pooter,Geert Joris,Stephane Rombauts,Bert De Rybel,Rosa Rademakers,Frank Van Breusegem,Mojca Strazisar,Kristel Sleegers,Wouter De Coster
Bioinformatics (Oxford, England)no. 9 (2024)
Xiao Ma,Steffen Vanneste,Jiyang Chang,Luca Ambrosino,Kerrie Barry,Till Bayer,Alexander A. Bobrov,LoriBeth Boston,Justin E. Campbell,Hengchi Chen,Maria Luisa Chiusano,Emanuela Dattolo,Jane Grimwood,Guifen He,Jerry Jenkins,Marina Khachaturyan,Lázaro Marín-Guirao,Attila Mesterházy,Danish-Daniel Muhd,Jessica Pazzaglia,Chris Plott,Shanmugam Rajasekar,Stephane Rombauts,Miriam Ruocco,Alison Scott,Min Pau Tan,Jozefien Van de Velde,Bartel Vanholme,Jenell Webber,Li Lian Wong,Mi Yan,Yeong Yik Sung,Polina Novikova,Jeremy Schmutz,Thorsten B. H. Reusch,Gabriele Procaccini,Jeanine L. Olsen,Yves Van de Peer
Jarkko Salojaervi,Aditi Rambani,Zhe Yu,Romain Guyot,Susan Strickler,Maud Lepelley,Cui Wang,Sitaram Rajaraman,Pasi Rastas,Chunfang Zheng, Daniella Santos Munoz,Joao Meidanis,Alexandre Rossi Paschoal,Yves Bawin,Trevor J. Krabbenhoft, Zhen Qin Wang,Steven J. Fleck, Rudy Aussel,Laurence Bellanger,Aline Charpagne,Coralie Fournier,Mohamed Kassam,Gregory Lefebvre,Sylviane Metairon,Deborah Moine,Michel Rigoreau,Jens Stolte,Perla Hamon,Emmanuel Couturon,Christine Tranchant-Dubreuil,Minakshi Mukherjee,Tianying Lan,Jan Engelhardt, Peter Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki,Ucu Sumirat,Ching Man Wai,Nicolas Dauchot,Simon Orozco-Arias,Andrea Garavito,Catherine Kiwuka,Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit,Lorenzo Carretero-Paulet,Oliveiro Guerreiro Filho,Masako Toma Braghini,Lilian Padilha, Gustavo Hiroshi Sera,Tom Ruttink,Robert Henry,Pierre Marraccini,Yves van de Peer,Alan Andrade,Douglas Domingues,Giovanni Giuliano,Lukas Mueller,Luiz Filipe Pereira,Stephane Plaisance,Valerie Poncet,Stephane Rombauts,David Sankoff,Victor A. Albert,Dominique Crouzillat,Alexandre de Kochko,Patrick Descombes
NATURE GENETICSno. 4 (2024)
ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2024)
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Xiao Ma,Steffen Vanneste,Jiyang Chang,Luca Ambrosino,Kerrie Barry,Till Bayer,Alexander A. Bobrov,LoriBeth Boston,Justin E Campbell,Hengchi Chen,Maria Luisa Chiusano,Emanuela Dattolo,Jane Grimwood,Guifen He,Jerry Jenkins,Marina Khachaturyan,Lázaro Marín-Guirao,Attila Mesterházy,Danish-Daniel Muhd,Jessica Pazzaglia,Chris Plott,Shanmugam Rajasekar,Stephane Rombauts,Miriam Ruocco,Alison Scott,Min Pau Tan,Jozefien Van de Velde,Bartel Vanholme,Jenell Webber,Li Lian Wong,Mi Yan,Yeong Yik Sung,Polina Novikova,Jeremy Schmutz,Thorsten Reusch,Gabriele Procaccini,Jeanine Olsen,Yves Van de Peer
bioRxiv (2023)
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Author Statistics
#Papers: 143
#Citation: 27693
H-Index: 52
G-Index: 113
Sociability: 7
Diversity: 3
Activity: 28
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