John Jaime Riascos - Bioinformatics Systems Biology, Ghent University

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Career Trajectory

Bio

My main interests are crop genomics and molecular breeding, and at present I am a researcher at the Colombian Sugarcane Research Center (CENICANA). At CENICANA we are taking advantage of the new (NGS) sequencing technologies (RNASeq, RADSeq and GBS) to explore the transcriptome and genome of relevant sugarcane genotypes. Our final objective is identify and characterize sugarcane genes and markers that can be used in the development of new commercial sugarcane hybrids.

Research Interests

Papers共 20 篇Author StatisticsCo-AuthorSimilar Experts

By YearBy Citation主题筛选期刊级别筛选合作者筛选合作机构筛选

Sequencing Vs. Amplification for the Estimation of Allele Dosages in Sugarcane (saccharum Spp.)

Hugo Jaimes, Alejandra Londono, Carolina Saavedra-Diaz,Jhon Henry Trujillo-Montenegro, Jershon Lopez-Gerena,John J. Riascos,Fernando S. Aguilar

APPLICATIONS IN PLANT SCIENCES（2024）

Cited0Views0WOSBibtex

Sparse Testing Designs for Optimizing Predictive Ability in Sugarcane Populations

Julian Garcia-Abadillo,Paul Adunola,Fernando Silva Aguilar,Jhon Henry Trujillo-Montenegro,John Jaime Riascos,Reyna Persa,Julio Sanchez,Diego Jarquin

Frontiers in Plant Science (2024)

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Assessing Drought Stress in Sugarcane with Gene Expression and Phenomic Data Using CSI-OC

Camila Riccio-Rengifo,Mauricio Ramirez-Castrillon,Chrystian C. Sosa,Fernando S. Aguilar,Jhon Henry Trujillo-Montenegro,John J. Riascos,Jorge Finke,Camilo Rocha

INDUSTRIAL CROPS AND PRODUCTS (2024)

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Genetic Association Analysis in Sugarcane (saccharum Spp.) for Sucrose Accumulation in Humid Environments in Colombia

Carolina Saavedra-Díaz,Jhon Henry Trujillo-Montenegro, Hugo Arley Jaimes, Alejandra Londoño,Fredy Antonio Salazar Villareal, Luis Orlando López,Carlos Arturo Viveros Valens, Jershon López-Gerena,John J. Riascos, Yeison Mauricio Quevedo,Fernando S. Aguilar

BMC Plant Biologyno. 1 (2024): 1-26

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The ÓMICAS Alliance, an International Research Program on Multi-Omics for Crop Breeding Optimization

Andres Jaramillo-Botero,Julian Colorado,Mauricio Quimbaya,Maria Camila Rebolledo,Mathias Lorieux,Thaura Ghneim-Herrera,Carlos A. Arango,Luis E. Tobon,Jorge Finke,Camilo Rocha, Fernando Munoz,John J. Riascos,Fernando Silva,Ngonidzashe Chirinda,Mario Caccamo,Klaas Vandepoele,William A. Goddard

Frontiers in plant science（2022）

Cited1Views0Bibtex

Modern Approaches for Transcriptome Analyses in Plants

Diego Mauricio Riano-Pachon,Hector Fabio Espitia-Navarro,John Jaime Riascos,Gabriel Rodrigues Alves Margarido

Advances in Experimental Medicine and Biology（2021）

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Unraveling the Genome of a High Yielding Colombian Sugarcane Hybrid

Jhon Henry Trujillo-Montenegro,Maria Juliana Rodriguez Cubillos,Cristian Dario Loaiza, Manuel Quintero,Hector Fabio Espitia-Navarro,Fredy Antonio Salazar Villareal,Carlos Arturo Viveros Valens,Andres Fernando Gonzalez Barrios,Jose De Vega,Jorge Duitama,John J. Riascos

Frontiers in Plant Science（2021）

Cited12Views0WOSBibtex

NGSEP3: Accurate Variant Calling Across Species and Sequencing Protocols

Daniel Tello,Juanita Gil,Cristian D. Loaiza,John J. Riascos,Nicolas Cardozo,Jorge Duitama

Bioinformatics（2019）

Cited47Views0EIWOSBibtex

Allele-defined Genome of the Autopolyploid Sugarcane Saccharum Spontaneum L

Jisen Zhang,Xingtan Zhang,Haibao Tang,Qing Zhang,Xiuting Hua,Xiaokai Ma,Fan Zhu,Tyler Jones,Xinguang Zhu,John Bowers,Ching Man Wai,Chunfang Zheng,Yan Shi,Shuai Chen,Xiuming Xu,Jingjing Yue,David R Nelson,Lixian Huang,Zhen Li,Huimin Xu,Dong Zhou,Yongjun Wang,Weichang Hu,Jishan Lin,Youjin Deng,Neha Pandey,Melina Mancini,Dessireé Zerpa,Julie K Nguyen,Liming Wang,Liang Yu,Yinghui Xin,Liangfa Ge,Jie Arro,Jennifer O Han,Setu Chakrabarty, Marija Pushko,Wenping Zhang,Yanhong Ma,Panpan Ma,Mingju Lv,Faming Chen,Guangyong Zheng,Jingsheng Xu,Zhenhui Yang,Fang Deng,Xuequn Chen,Zhenyang Liao,Xunxiao Zhang,Zhicong Lin,Hai Lin,Hansong Yan,Zheng Kuang,Weimin Zhong,Pingping Liang,Guofeng Wang, Yuan,Jiaxian Shi,Jinxiang Hou,Jingxian Lin,Jingjing Jin,Peijian Cao,Qiaochu Shen,Qing Jiang,Ping Zhou,Yaying Ma,Xiaodan Zhang,Rongrong Xu,Juan Liu,Yongmei Zhou,Haifeng Jia,Qing Ma,Rui Qi,Zhiliang Zhang,Jingping Fang,Hongkun Fang,Jinjin Song,Mengjuan Wang,Guangrui Dong, Gang Wang,Zheng Chen,Teng Ma,Hong Liu,Singha R Dhungana, Sarah E Huss,Xiping Yang,Anupma Sharma,Jhon H Trujillo, Maria C Martinez,Matthew Hudson,John J Riascos,Mary Schuler,Li-Qing Chen,David M Braun,Lei Li,Qingyi Yu,Jianping Wang,Kai Wang,Michael C Schatz,David Heckerman, Marie-Anne Van Sluys,Glaucia Mendes Souza,Paul H Moore,David Sankoff,Robert VanBuren,Andrew H Paterson,Chifumi Nagai,Ray Ming

Nature genetics（2018）

Cited386Views0WOSBibtex

386

Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L

Zhang, Jisen,Zhang, Xingtan,Tang, Haibao,Zhang, Qing,Hua, Xiuting,Ma, Xiaokai,Zhu, Fan,Jones, Tyler,Zhu, Xinguang,Bowers, John,Wai, Ching Man,Zheng, Chunfang,Shi, Yan,Chen, Shuai,Xu, Xiuming,Yue, Jingjing,Nelson, David R.,Huang, Lixian,Li, Zhen,Xu, Huimin,Zhou, Dong,Wang, Yongjun,Hu, Weichang,Lin, Jishan,Deng, Youjin,Pandey, Neha,Mancini, Melina,Zerpa, Dessireé,Nguyen, Julie K.,Wang, Liming,Yu, Liang,Xin, Yinghui,Ge, Liangfa,Arro, Jie,Han, Jennifer O.,Chakrabarty, Setu, Pushko, Marija,Zhang, Wenping,Ma, Yanhong,Ma, Panpan,Lv, Mingju,Chen, Faming,Zheng, Guangyong,Xu, Jingsheng,Yang, Zhenhui,Deng, Fang,Chen, Xuequn,Liao, Zhenyang,Zhang, Xunxiao,Lin, Zhicong,Lin, Hai,Yan, Hansong,Kuang, Zheng,Zhong, Weimin,Liang, Pingping,Wang, Guofeng,Yuan, Yuan,Shi, Jiaxian,Hou, Jinxiang,Lin, Jingxian,Jin, Jingjing,Cao, Peijian,Shen, Qiaochu,Jiang, Qing,Zhou, Ping,Ma, Yaying,Zhang, Xiaodan,Xu, Rongrong,Liu, Juan,Zhou, Yongmei,Jia, Haifeng,Ma, Qing,Qi, Rui,Zhang, Zhiliang,Fang, Jingping,Fang, Hongkun,Song, Jinjin,Wang, Mengjuan,Dong, Guangrui, Wang, Gang,Chen, Zheng,Ma, Teng,Liu, Hong,Dhungana, Singha R., Huss, Sarah E.,Yang, Xiping,Sharma, Anupma,Trujillo, Jhon H., Martinez, Maria C.,Hudson, Matthew,Riascos, John J.,Schuler, Mary,Chen, Li-Qing,Braun, David M.,Li, Lei,Yu, Qingyi,Wang, Jianping,Wang, Kai,Schatz, Michael C.,Heckerman, David, Van Sluys, Marie-Anne,Souza, Glaucia Mendes,Moore, Paul H.,Sankoff, David,VanBuren, Robert,Paterson, Andrew H.,Nagai, Chifumi,Ming, Ray

Nature Genetics（2018）

Cited386Views0WOSNATUREBibtex

386

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