基本信息
浏览量:0
职业迁徙
个人简介
Ph.D. student
Department of Genomics and Molecular Biotechnology, Molecular Biology and Genetics PhD Program, Dokuz Eylul University, Izmir International Biomedicine and Genome Institute (IBG-İzmir), Izmir, Turkey, Feb 2018 –Present
CONFERENCE PAPERS
T. HATIPOGLU, E. ESMERAY SÖNMEZ, X. HU, H. YUAN, A. ERSEN DANYELI, A. SEYHANLI, T. Ö. SÜZEK, W. ZHANG, A. OLGUN, B. AKMAN, S. ÖZKAL, H. YOU, I. ALACACIOGLU, M. A. ÖZCAN & C. KÜÇÜK, Ultra-Deep Targeted Sequencing Reveals Cancer-Associated, Prognostically Significant Mutations in Circulating Cell-Free DNA in Treatment-Naive Patients with Follicular Lymphoma, Full Text Paper, 62nd ASH Annual Meeting and Exposition, 05 December 2020, 08 December 2020, 0006-4971, 136, 1, 20 - 21.
E. ESMERAY SÖNMEZ, D. KURSUN, B. AKMAN, X. HU, H. YUAN, A. ERSEN DANYELI, I. ALACACIOGLU, S. ÖZKAL, T. HATIPOGLU, A. OLGUN, T. K. ERDAG & C. KÜÇÜK, Identification of protooncogene candidates associated with mantle cell lymphoma prognosis by transcriptomic analysis, Oral presentation, 6. National Hematology Congress, 28 October 2020, 31 October 2020, 77 - 77.
E. ESMERAY SÖNMEZ, T. HATIPOGLU, A. SEYHANLI, H. YUAN, A. OLGUN, E. TASKIRAN, X. HU, I. ALACACIOGLU, A. ERSEN DANYELI, S. ÖZKAL, T. Ö. SÜZEK, M. A. ÖZCAN & C. KÜÇÜK, Determination of Somatic Variants in Follicular Lymphoma Cases using Mutect2 Bioinformatic Workflow, Oral Presentation, V. Turkey in vitro Diagnostics Symposium, 09 February 2020, 21 February 2020.
D. KURSUN, B. AKMAN, X. HU, T. HATIPOGLU, H. YUAN, S. ÖZKAL, I. ALACACIOGLU, A. OLGUN, E. ESMERAY SÖNMEZ, T. K. ERDAG & C. KÜÇÜK, DETERMINATION OF LONG NON-CODING RNAS WITH THE POTENTIAL TO BE A SPECIFIC DIAGNOSIS, PROGNOSIS MARKER OR TREATMENT TARGET IN MANTLE CELL LYMPHOMAS THROUGH WHOLE TRANSCRIPTOM SEQUENCE ANALYSIS, Oral Presentation, 10th Surgical Research Congress, 13 December 2019, 14 December 2019, 25 - 25.
T. HATIPOGLU, E. ESMERAY SÖNMEZ, A. SEYHANLI, H. YUAN, A. OLGUN, E. TASKIRAN, X. HU, I. ALACACIOGLU, S. ÖZKAL, T. SÜZEK, M. A. ÖZCAN & C. KÜÇÜK, Follicular lymphoma plasma circulating free DNA's contains a great deal of cancer-related somatic mutations in tumor tissue, Oral Presentation, V. Turkey in vitro Diagnostic Health Biotechnology Symposium, 14 November 2019, 17 November 2019.
EXPERIENCE
Summer Intern
Institute of Zoology, Slovak Academy of Science
Dúbravská cesta 9 SK-845 06 Bratislava, Slovakia
Jun 2013 – Sep 2013
COMPUTER SKILLS
Programming: Perl, BioPerl, MySQL, R, Bash scripting
Database Management: MySQL Workbench, ER Diagram design
Network Visualization: Cytoscape
Version Control: Git, Github, Bitbucket
Operating System: Windows, Linux
GRANTS AND SCHOLARSHIP
-YÖK: 100/2000 YOK Doctoral Scholarship (2018 - 2022.)
-BIDEB Supports: Directorate of Activity Supports and Education Scholarships, 2211- C Domestic Doctorate Scholarship Program for Priority Fields, Supported, 2021
-2250-Graduate Scholarships Performance Program
-ARDEB Supports
Bioinformatics Projects:
-Introduction to Bioinformatics:E. coli (Strain K12) Gene Prediction Project with Gene Finder Tools (FrameD, Glimmer, MetaGene, GeneMark, NCBI ORFfinder, Python)
-Nanotechnology in Medicine:Recent Developments in Cancer Therapy by The Use of Nanotechnology
-Database Management:Design and Implementation of a Database of Self Breast Examination and Mammography Screening Behaviors Among Turkish Women (MySQL/MySQL Workbench)
-Translational Bioinformatics:Examination of Gut Microbiota (Comparing Protein Functions of Lean vs. Obese People and Related with Human Gut Microbiome) Using BioPerl and Cytoscape
-Statistical Methods For Bioinformatics: Multiple Logistic Regression Analysis To Examine The Association Between HAC And MetS After Adjusting For Possible Confounders (Age, AHI, and BMI) (R/RStudio)
-Statistical Computing:Correlation Between National Influenza Surveillance Data and Search Queries from Mobile Devices and Desktops in South Korea (R/RStudio)
-Biological Sequence Analysis:Breast Carcinoma and Plasma Exosome microRNAs (Tuxedo pipeline (Flexbar, Bowtie2, Tophat, Samtools, Cufflink, Cuffmerge, Cuffdiff, CummeRbund), R Analysis, RNAseqmut, Annovar, SRAtool), BlastX, Bioedit.
-High Throughput Genomic Data Analysis: Differential expression analysis and maftools (Mutation Annotation Format) analysis using Liver Hepatocellular Carcinoma RNA sequencing data from TCGA-LIHC database (R/RStudio, TCGAbiolinks, cemitools, bioMart, GO (Gene ontology) term enrichment analysis, DAVID, co-expression network analysis using WGCNA, clusterProfiler, edgeR, PCA, DESeq2).
-Computational Structural Biology: An overview of Comparative Modelling and Resources Dedicated to Large-scale Modelling of Genome Sequences.HADDOCK web docking.
-Visualization of Molecular Structure:Pymol.
-Variant Discovery:AnnoVar, Genome Analysis Toolkit, BWA, Picard, FastQC, AfterQC, FastP, IGV, GATK.
-Text Editing:Notepad++, LaTex
研究兴趣
论文共 7 篇作者统计合作学者相似作者
按年份排序按引用量排序主题筛选期刊级别筛选合作者筛选合作机构筛选
时间
引用量
主题
期刊级别
合作者
合作机构
Bloodno. Supplement 1 (2023): 1177-1177
Esra Sönmez,Tevfik Hatipoğlu,Xiaozhou Hu,Hongling Yuan,Ayça Erşen Danyeli, Ayla Anar Arıcı,Ahmet Şeyhanlı,Zuhal Önder Siviş,Bengü Demirag,Eda Ataseven,Dilek İnce,Zekiye Altun,Safiye Aktaş,İnci Alacacıoğlu,Tuğba Önal Süzek,Nazan Özsan,Taner Erdağ, Elvan Çağlar Çıtak,Sermin Özkal,Mehmet Özcan,Nazan Çetingül,Erdener Özer,Tezer Kutluk,Nur Olgun,Can Küçük
Sağlık Bilimlerinde İleri Araştırmalar Dergisi / Journal of Advanced Research in Health Sciencesno. 1 (2022): 31-31
作者统计
#Papers: 7
#Citation: 14
H-Index: 2
G-Index: 3
Sociability: 4
Diversity: 2
Activity: 5
合作学者
合作机构
D-Core
- 合作者
- 学生
- 导师
数据免责声明
页面数据均来自互联网公开来源、合作出版商和通过AI技术自动分析结果,我们不对页面数据的有效性、准确性、正确性、可靠性、完整性和及时性做出任何承诺和保证。若有疑问,可以通过电子邮件方式联系我们:report@aminer.cn