Cheyu Lee - Department of Computer Science, University of California

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Single-cell Genomics and Regulatory Networks for 388 Human Brains

Prashant S. Emani,Jason J. Liu,Declan Clarke,Matthew Jensen,Jonathan Warrell,Chirag Gupta, Ran Meng,Che Yu Lee,Siwei Xu, Cagatay Dursun,Shaoke Lou,Yuhang Chen,Zhiyuan Chu,Timur Galeev,Ahyeon Hwang, Yunyang Li,Pengyu Ni, Xiao Zhou,Trygve E. Bakken,Jaroslav Bendl,Lucy Bicks, Tanima Chatterjee,Lijun Cheng,Yuyan Cheng,Yi Dai,Ziheng Duan, Mary Flaherty,John F. Fullard, Michael Gancz,Diego Garrido-Martin, Sophia Gaynor-Gillett,Jennifer Grundman, Natalie Hawken, Ella Henry,Gabriel E. Hoffman, Ao Huang,Yunzhe Jiang,Ting Jin,Nikolas L. Jorstad,Riki Kawaguchi,Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu,Shaojie Ma,Michael Margolis, Samantha Mazariegos,Jill Moore,Jennifer R. Moran, Eric Nguyen,Nishigandha Phalke,Milos Pjanic,Henry Pratt,Diana Quintero, Ananya S. Rajagopalan, Tiernon R. Riesenmy, Nicole Shedd, Manman Shi, Megan Spector,Rosemarie Terwilliger,Kyle J. Travaglini,Brie Wamsley,Gaoyuan Wang,Yan Xia,Shaohua Xiao,Andrew C. Yang,Suchen Zheng,Michael J. Gandal, Donghoon Lee,Ed S. Lein,Panos Roussos,Nenad Sestan,Zhiping Weng,Kevin P. White,Hyejung Won,Matthew J. Girgenti,Jing Zhang,Daifeng Wang,Daniel Geschwind,Mark Gerstein

SCIENCEno. 6698 (2024)

引用0浏览0WOSSCIENCE引用

Imiracle: an Iterative Multi-View Graph Neural Network to Model Intercellular Gene Regulation from Spatial Transcriptomic Data

Ziheng Duan,Siwei Xu,Cheyu Lee, Dylan Riffle,Jing Zhang

CIKM '24 Proceedings of the 33rd ACM International Conference on Information and Knowledge Managementpp.538-548, (2024)

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The single-cell opioid responses in the context of HIV (SCORCH) consortium

Seth A Ament,Rianne R Campbell,Mary Kay Lobo,Joseph P Receveur,Kriti Agrawal,Alejandra Borjabad,Siddappa N Byrareddy,Linda Chang,Declan Clarke,Prashant Emani,Dana Gabuzda,Kyle J Gaulton,Michelle Giglio,Federico M Giorgi, Busra Gok,Chittibabu Guda,Eran Hadas,Brian R Herb, Wen Hu, Anita Huttner, Mohammad R Ishmam,Michelle M Jacobs,Jennifer Kelschenbach, Dong-Wook Kim,Cheyu Lee, Shuhui Liu, Xiaokun Liu,Bertha K Madras,Anup A Mahurkar,Deborah C Mash,Eran A Mukamel,Meng Niu,Richard M O'Connor,Chelsea M Pagan,Alina P S Pang, Piya Pillai,Vez Repunte-Canonigo,W Brad Ruzicka, Jay Stanley,Timothy Tickle, Shang-Yi A Tsai,Allen Wang,Lauren Wills,Alyssa M Wilson,Susan N Wright,Siwei Xu,Junchen Yang,Maryam Zand, Le Zhang, Jing Zhang,Schahram Akbarian,Shilpa Buch,Christine S Cheng,Michael J Corley,Howard S Fox,Mark Gerstein,Suryaram Gummuluru,Myriam Heiman,Ya-Chi Ho,Manolis Kellis,Paul J Kenny,Yuval Kluger,Teresa A Milner,David J Moore,Susan Morgello,Lishomwa C Ndhlovu,Tariq M Rana,Pietro Paolo Sanna,John S Satterlee,Nenad Sestan,Stephen A Spector,Serena Spudich,Hagen U Tilgner,David J Volsky,Owen R White, Dionne W Williams,Hongkui Zeng

Molecular psychiatrypp.1-12, (2024)

引用0浏览0WOSNATURE引用

Turtling: A Time-aware Neural Topic Model on NIH Grant Data

Ruiyi Zhang,Ziheng Duan,CheYu Lee,Dylan Riffle,Martin Renqiang Min,Jing Zhang

Bioinformatics Advances（2023）

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Iherd: an Integrative Hierarchical Graph Representation Learning Framework to Quantify Network Changes and Prioritize Risk Genes in Disease

Ziheng Duan,Yi Dai,Ahyeon Hwang,Cheyu Lee, Kaichi Xie,Chutong Xiao,Min Xu,Matthew J. Girgenti,Jing Zhang

PLOS Computational Biology（2023）

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ExAD-GNN: Explainable Graph Neural Network for Alzheimer’s Disease State Prediction from Single-cell Data

Ziheng Duan,Cheyu Lee,Jing Zhang

APSIPA transactions on signal and information processingno. 5 (2023)

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Venus: an Efficient Virus Infection Detection and Fusion Site Discovery Method Using Single-Cell and Bulk RNA-seq Data

Che Yu Lee, Yuhang Chen,Ziheng Duan,Min Xu,Matthew J. Girgenti,Ke Xu,Mark Gerstein,Jing Zhang

PLOS computational biology/PLoS computational biologyno. 10 (2022): e1010636-e1010636

引用1浏览0WOS引用

Translator: A Transfer Learning Approach to Facilitate Single-Cell ATAC-Seq Data Analysis from Reference Dataset

Siwei Xu,Mario Skarica,Ahyeon Hwang,Yi Dai,Cheyu Lee,Matthew J. Girgenti,Jing Zhang

Journal of computational biology（2022）

引用0浏览0WOSEI引用

Effect of Host Immunity and Co-Infection on Larval Toxocariasis

Cheyu Lee

openalex（2016）

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Alternative Polyadenylation Sites Reveal Distinct Chromatin Accessibility and Histone Modification in Human Cell Lines

Che-Yu Lee,Liang Chen

Bioinformatics（2013）

引用18浏览0WOSEI引用

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