Andreas Tjärnberg - Center For Genomics and Systems Biology, New York University

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论文共 30 篇作者统计合作学者相似作者

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Structure-primed Embedding on the Transcription Factor Manifold Enables Transparent Model Architectures for Gene Regulatory Network and Latent Activity Inference

Andreas Tjärnberg,Maggie Beheler-Amass,Christopher A. Jackson,Lionel A. Christiaen,David Gresham,Richard Bonneau

GENOME BIOLOGYno. 1 (2024)

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GeneSPIDER2: Large Scale GRN Simulation and Benchmarking with Perturbed Single-Cell Data

Mateusz Garbulowski,Thomas Hillerton, Daniel Morgan,Deniz Secilmis,Lisbet Sonnhammer,Andreas Tjarnberg,Torbjorn E. M. Nordling,Erik L. L. Sonnhammer

NAR GENOMICS AND BIOINFORMATICSno. 3 (2024)

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Cell Cycle-Driven Transcriptome Maturation Confers Multilineage Competence to Cardiopharyngeal Progenitors

Yelena Y Bernadskaya, Ariel Kuan,Andreas Tjärnberg, Jonas Brandenburg, Ping Zheng, Keira Wiechecki,Nicole Kaplan, Margaux Failla, Maria Bikou, Oliver Madilian,Wei Wang,Lionel Christiaen

bioRxiv the preprint server for biology (2024)

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Structure primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference

Andreas Tjärnberg,Maggie Beheler-Amass,Christopher A Jackson,Lionel A Christiaen,David Gresham,Richard Bonneau

bioRxiv : the preprint server for biology（2023）

引用2浏览0WOS引用

Simultaneous Estimation of Gene Regulatory Network Structure and RNA Kinetics from Single Cell Gene Expression

Christopher A Jackson,Maggie Beheler-Amass,Andreas Tjärnberg,Ina Suresh,Angela Shang-Mei Hickey,Richard Bonneau,David Gresham

bioRxiv the preprint server for biology (2023)

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High Performance Single-Cell Gene Regulatory Network Inference at Scale: the Inferelator 3.0

Claudia Skok Gibbs,Christopher A. Jackson,Giuseppe-Antonio Saldi,Andreas Tjarnberg,Aashna Shah,Aaron Watters,Nicholas De Veaux,Konstantine Tchourine,Ren Yi,Tymor Hamamsy,Dayanne M. Castro,Nicholas Carriero,Bram L. Gorissen,David Gresham,Emily R. Miraldi,Richard Bonneau

Bioinformatics (Oxford, England)（2022）

引用23浏览0WOS引用

Knowledge of the Perturbation Design is Essential for Accurate Gene Regulatory Network Inference

Deniz Seçilmiş,Thomas Hillerton,Andreas Tjärnberg,Sven Nelander,Torbjörn E. M. Nordling,Erik L. L. Sonnhammer

Scientific reports（2022）

引用3浏览0WOSNATURE引用

Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data

Andreas Tjärnberg,Omar Mahmood,Christopher A Jackson,Giuseppe-Antonio Saldi,Kyunghyun Cho,Lionel A Christiaen,Richard A Bonneau

PLoS Computational Biology（2021）

引用21浏览0EIWOS引用

Uncovering Cancer Gene Regulation by Accurate Regulatory Network Inference from Uninformative Data

Deniz Seçilmiş,Thomas Hillerton,Daniel Morgan,Andreas Tjärnberg,Sven Nelander,Torbjörn E. M. Nordling,Erik L. L. Sonnhammer

npj systems biology and applications（2020）

引用13浏览0WOSNATURE引用

A validated single-cell-based strategy to identify diagnostic and therapeutic targets in complex diseases (vol 11, 47, 2019)

GENOME MEDICINEno. 1 (2020)

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