基本信息
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职业迁徙
个人简介
Bioinformaticist with experience in High-throughput data analysis (Transcriptom, CNV, SNPs), database development, text-mining and sequencing analysis. I'am working with JMP Genomics (SAS) and R (Bioconductor).
Study of biology, ecology and microbiology in Heidelberg. PhD in Molecularbiology (Cancer research in DKFZ in Heidelberg). Ten years of experience in bioinformatics.
Development and administration of our miRNA-target prediction database miRWalk (mirwalk.umm.uni-heidelberg.de). miRWalk is currently hostet on virtual server structure on a cloud infrastructure of the university of heidelberg (heiCloud). Most of the prediction work was performed on the bwUniCluster, part of the bwHPC. Interface is realized with Django framework.
My current job profile responsibilities are:
Leader of the Affymetrix Core facility, Center of medical research Mannheim, University of Heidelberg.
Core responsibilities:
- To conceptualize, design and analyze microarray-experiments
- To teach studtents and PHDs in bioinformatics
- To supervise students and PHDs (Bachelor, Master and doctor thesis)
- to provide bioinformatics support to my collaborators
- to perform statistical- and bioinformatics-analysis
- support molecular biology data generation and management, as well as lead the analysis and interpretation of experimental results including quality controls and performance metrics
Skills: HTML, CSS, MySQL, LaTex, Python, VBA, R, SAS
Software: JMP Genomics (SAS), SAS Enterprise Guide, R (Bioconductor), SPSS, Expression
Console (Affymetrix), GSEA (Broad Institute), ChAS, Genotyping Console (Affymetrix), Cytoscape, PathVisio, RStudio, MSWord, MSExcel, MSAccess, Dreamweaver,
Geany, Photoshop, Gimp
keywords:
- Microarray Expression Profiling
- Data Mining
- Text Mining
- Pathway- and Functional Analysis
- Transcription Factor Binding Site Search
- miRNA Binding Prediction
- SNP Array Analysis
- Next Generation Sequencing Analysis (RNA-seq, ChIP-seq, Single-Cell-sequencing)
Study of biology, ecology and microbiology in Heidelberg. PhD in Molecularbiology (Cancer research in DKFZ in Heidelberg). Ten years of experience in bioinformatics.
Development and administration of our miRNA-target prediction database miRWalk (mirwalk.umm.uni-heidelberg.de). miRWalk is currently hostet on virtual server structure on a cloud infrastructure of the university of heidelberg (heiCloud). Most of the prediction work was performed on the bwUniCluster, part of the bwHPC. Interface is realized with Django framework.
My current job profile responsibilities are:
Leader of the Affymetrix Core facility, Center of medical research Mannheim, University of Heidelberg.
Core responsibilities:
- To conceptualize, design and analyze microarray-experiments
- To teach studtents and PHDs in bioinformatics
- To supervise students and PHDs (Bachelor, Master and doctor thesis)
- to provide bioinformatics support to my collaborators
- to perform statistical- and bioinformatics-analysis
- support molecular biology data generation and management, as well as lead the analysis and interpretation of experimental results including quality controls and performance metrics
Skills: HTML, CSS, MySQL, LaTex, Python, VBA, R, SAS
Software: JMP Genomics (SAS), SAS Enterprise Guide, R (Bioconductor), SPSS, Expression
Console (Affymetrix), GSEA (Broad Institute), ChAS, Genotyping Console (Affymetrix), Cytoscape, PathVisio, RStudio, MSWord, MSExcel, MSAccess, Dreamweaver,
Geany, Photoshop, Gimp
keywords:
- Microarray Expression Profiling
- Data Mining
- Text Mining
- Pathway- and Functional Analysis
- Transcription Factor Binding Site Search
- miRNA Binding Prediction
- SNP Array Analysis
- Next Generation Sequencing Analysis (RNA-seq, ChIP-seq, Single-Cell-sequencing)
研究兴趣
论文共 249 篇作者统计合作学者相似作者
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Thorben Huth, Emely C. Dreher,Steffen Lemke,Sarah Fritzsche,Raisatun N. Sugiyanto,Darko Castven,David Ibberson,Carsten Sticht, Eva Eiteneuer,Anna Jauch,Stefan Pusch,Thomas Albrecht,
Valentina Raia,Marcel Schilling,Martin Böhm, Bettina Hahn,Andreas Kowarsch,Andreas Raue,Carsten Sticht, Sebastian Bohl,Maria Saile,Peter Möller,Norbert Gretz,Jens Timmer,
crossref(2023)
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