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Medical Image Imputation from Image Collections

Adrian V. Dalca,Katherine L. Bouman,William T. Freeman,Natalia S. Rost,Mert R. Sabuncu,Polina Golland, Michael W. Weiner,Paul Aisen,Michael Weiner, Ronald Petersen, Clifford R. Jack,William Jagust,John Q. Trojanowki, Arthur W. Toga,Laurel Beckett, Robert C. Green, Andrew J. Saykin, John Morris, Leslie M. Shaw,Zaven Khachaturian,Greg Sorensen, Maria Carrillo,Lew Kuller,Marc Raichle,Steven Paul, Peter Davies,Howard Fillit, Franz Hefti,David Holtzman,M. Marcel Mesulam,William Potter,Peter Snyder, Eli Lilly,Veronika Logovinsky,Tom Montine,Gustavo Jimenez,Michael Donohue,Devon Gessert,Kelly Harless,Jennifer Salazar,Yuliana Cabrera,Sarah Walter,Lindsey Hergesheimer, Danielle Harvey, Matthew Bernstein,Nick Fox, Paul Thompson, Norbert Schuff,Charles DeCArli,Bret Borowski,Jeff Gunter,Matt Senjem, Prashanthi Vemuri, David Jones,Kejal Kantarci,Chad Ward,Robert A. Koeppe,Norm Foster, Eric M. Reiman, Kewei Chen,Chet Mathis,Susan Landau, John C. Morris, Nigel J. Cairns,Erin Franklin,Lisa Taylor-Reinwald, Virginia Lee,Magdalena Korecka,Michal Figurski,Karen Crawford,Scott Neu,Tatiana M. Foroud, Steven Potkin, Li Shen,Kelley Faber, Sungeun Kim,Kwangsik Nho,Lean Thal,Leon Thal,Neil Buckholtz,Peter J. Snyder,Marilyn Albert,Richard Frank, John Hsiao,Joseph Quinn,Lisa C. Silbert,Betty Lind,Jeffrey A. Kaye,Raina Carter,Sara Dolen,Lon S. Schneider,Sonia Pawluczyk, Mauricio Becerra,Liberty Teodoro,Bryan M. Spann,James Brewer,Helen Vanderswag,Adam Fleisher,Jaimie Ziolkowski,Judith L. Heidebrink,Joanne L. Lord,Sara S. Mason,Colleen S. Albers, David Knopman,Kris Johnson,Javier Villanueva-Meyer,Valory Pavlik, Nathaniel Pacini,Ashley Lamb, Joseph S. Kass,Rachelle S. Doody,Victoria Shibley,Munir Chowdhury,Susan Rountree,Mimi Dang,Yaakov Stern,Lawrence S. Honig,Karen L. Bell,Randy Yeh, Beau Ances, David Winkfield,Maria Carroll,Angela Oliver,Mary L. Creech, Mark A. Mintun,Stacy Schneider,Daniel Marson,David Geldmacher,Marissa Natelson Love, Randall Griffith, David Clark,John Brockington,Hillel Grossman,Effie Mitsis,Raj C. Shah,Melissa Lamar, Patricia Samuels, Ranjan Duara,Maria T. Greig-Custo,Rosemarie Rodriguez,Chiadi Onyike, Daniel D'Agostino,Stephanie Kielb,Martin Sadowski,Mohammed O. Sheikh,Jamika Singleton-Garvin,Anaztasia Ulysse, Mrunalini Gaikwad,P. Murali Doraiswamy, Jeffrey R. Petrella,Olga James,Salvador Borges-Neto, Terence Z. Wong,Edward Coleman, Jason H. Karlawish, David A. Wolk,Sanjeev Vaishnavi, Christopher M. Clark,Steven E. Arnold,Charles D. Smith,Greg Jicha,Peter Hardy,Riham El Khouli, Elizabeth Oates,Gary Conrad, Oscar L. Lopez,MaryAnn Oakley,Donna M. Simpson,Anton P. Porsteinsson,Kim Martin, Nancy Kowalksi,Melanie Keltz,Bonnie S. Goldstein,Kelly M. Makino,M. Saleem Ismail,Connie Brand,Gaby Thai,Aimee Pierce, Beatriz Yanez, Elizabeth Sosa,Megan Witbracht,Kyle Womack,Dana Mathews,Mary Quiceno,Allan I. Levey,James J. Lah,Janet S. Cellar,Jeffrey M. Burns, Russell H. Swerdlow,William M. Brooks,Ellen Woo,Daniel H. S. Silverman,Edmond Teng,Sarah Kremen,Liana Apostolova,Kathleen Tingus,Po H. Lu, George Bartzokis, Neill R. Graff-Radford,Francine Parfitt,Kim Poki-Walker,Martin R. Farlow,Ann Marie Hake, Brandy R. Matthews,Jared R. Brosch, Scott Herring, Christopher H. van Dyck,Richard E. Carson,Pradeep Varma, Howard Chertkow,Howard Bergman,Chris Hosein, Sandra Black, Bojana Stefanovic, Chris (Chinthaka) Heyn, Ging-Yuek Robin Hsiung,Benita Mudge, Vesna Sossi, Howard Feldman,Michele Assaly,Elizabeth Finger,Stephen Pasternack,William Pavlosky,Irina Rachinsky,Dick Drost,Andrew Kertesz,Charles Bernick,Donna Munic,Marek-Marsel Mesulam,Emily Rogalski,Kristine Lipowski, Sandra Weintraub,Borna Bonakdarpour,Diana Kerwin,Chuang-Kuo Wu, Nancy Johnson,Carl Sadowsky,Teresa Villena,Raymond Scott Turner,Kathleen Johnson,Brigid Reynolds,Reisa A. Sperling, Keith A. Johnson,Gad A. Marshall, Jerome Yesavage,Joy L. Taylor,Steven Chao,Barton Lane,Allyson Rosen,Jared Tinklenberg,Edward Zamrini,Christine M. Belden,Sherye A. Sirrel,Neil Kowall,Ronald Killiany, Andrew E. Budson,Alexander Norbash,Patricia Lynn Johnson,Thomas O. Obisesan,Ntekim E. Oyonumo,Joanne Allard, Olu Ogunlana,Alan Lerner,Paula Ogrocki,Curtis Tatsuoka,Parianne Fatica,Evan Fletcher, Pauline Maillard,John Olichney,Charles DeCarli, Owen Carmichael,Smita Kittur,Michael Borrie,T-Y Lee,Rob Bartha, Sterling Johnson, Sanjay Asthana,Cynthia M. Carlsson, Pierre Tariot,Anna Burke, Joel Hetelle, Kathryn DeMarco,Nadira Trncic,Stephanie Reeder,Vernice Bates,Horacio Capote,Michelle Rainka,Douglas W. Scharre,Maria Kataki,Rawan Tarawneh,Earl A. Zimmerman,Dzintra Celmins, David Hart,Godfrey D. Pearlson,Karen Blank,Karen Anderson,Laura A. Flashman,Marc Seltzer,Mary L. Hynes,Robert B. Santulli, Kaycee M. Sink,Mia Yang, Akiva Mintz, Brian R. Ott, Geoffrey Tremont,Lori A. Daiello,Courtney Bodge, Stephen Salloway, Paul Malloy,Stephen Correia, Athena Lee,Howard J. Rosen, Bruce L. Miller,David Perry,Jacobo Mintzer,Kenneth Spicer,David Bachman,Stephen Pasternak, John Rogers,Nunzio Pomara,Raymundo Hernando,Antero Sarrael, Delwyn D. Miller, Karen Ekstam Smith,Hristina Koleva, Ki Won Nam,Hyungsub Shim,Susan K. Schultz, Norman Relkin,Gloria Chiang,Michael Lin,Lisa Ravdin,Amanda Smith, Christi Leach,Balebail Ashok Raj,Kristin Fargher,Thomas Neylan,Jordan Grafman,Lindsey Hergesheimen,Jacqueline Hayes,Shannon Finley,Erin Householder,Karl Friedl,Debra Fleischman, Konstantinos Arfanakis,Daniel Varon,Maria T. Greig,Bonnie Goldstein, Kimberly S. Martin, Steven G. Potkin, Adrian Preda,Dana Nguyen,Dino Massoglia,Olga Brawman-Mintzer,Walter Martinez,Howard Rosen,Kelly Behan, Gad Marshal, Marwan N. Sabbagh,Sandra A. Jacobson,Saba Wolday, Sterling C. Johnson,J. Jay Fruehling,Sandra Harding, Elaine R. Peskind,Eric C. Petrie,Gail Li, Jerome A. Yesavage,Ansgar J. Furst,Scott Mackin,Rema Raman, Erin Drake, Mike Donohue,Elizabeth Shaffer,Craig Nelson,David Bickford,Meryl Butters,Michelle Zmuda,Denise Reyes,Kelley M. Faber,Kelly N. Nudelman,Yiu Ho Au,Kelly Scherer,Daniel Catalinotto, Samuel Stark,Elise Ong, Dariella Fernandez

IEEE transactions on medical imaging(2019)

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摘要
We present an algorithm for creating high resolution anatomically plausible images consistent with acquired clinical brain MRI scans with large inter-slice spacing. Although large data sets of clinical images contain a wealth of information, time constraints during acquisition result in sparse scans that fail to capture much of the anatomy. These characteristics often render computational analysis impractical as many image analysis algorithms tend to fail when applied to such images. Highly specialized algorithms that explicitly handle sparse slice spacing do not generalize well across problem domains. In contrast, we aim to enable application of existing algorithms that were originally developed for high resolution research scans to significantly undersampled scans. We introduce a generative model that captures fine-scale anatomical structure across subjects in clinical image collections and derive an algorithm for filling in the missing data in scans with large inter-slice spacing. Our experimental results demonstrate that the resulting method outperforms state-of-the-art upsampling super-resolution techniques, and promises to facilitate subsequent analysis not previously possible with scans of this quality. Our implementation is freely available at https://github.com/adalca/papago.
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关键词
Imputation,super-resolution,clinical scans,MRI,sparse slices,thick slices,brain scans
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