Zachary B Haiman - Department of Bioengineering, University of California San Diego

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论文共 11 篇作者统计合作学者相似作者

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RBC-GEM: a Knowledge Base for Systems Biology of Human Red Blood Cell Metabolism

Zachary B. Haiman, Angelo D’Alessandro,Bernhard O. Palsson

crossref（2024）

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A Data-Driven Approach for Timescale Decomposition of Biochemical Reaction Networks

Amir Akbari,Zachary B. Haiman,Bernhard O. Palsson

MSYSTEMS（2024）

引用0浏览0WOS引用

Imodulonminer and PyModulon: Software for Unsupervised Mining of Gene Expression Compendia

Anand V Sastry, Yuan,Saugat Poudel,Kevin Rychel,Reo Yoo, Cameron R Lamoureux,Gaoyuan Li, Joshua T Burrows,Siddharth Chauhan,Zachary B Haiman, Tahani Al Bulushi,Yara Seif,Bernhard O Palsson, Daniel C Zielinski

PLoS computational biologyno. 10 (2024): e1012546-e1012546

引用0浏览0WOS引用

Modeling Red Blood Cell Metabolism in the Omics Era

Alicia Key,Zachary Haiman,Bernhard O. Palsson,Angelo D’Alessandro

Metabolites（2023）

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BioSimulators: a Central Registry of Simulation Engines and Services for Recommending Specific Tools

Bilal Shaikh,Lucian P. Smith,Dan Vasilescu,Gnaneswara Marupilla,Michael Wilson,Eran Agmon,Henry Agnew,Steven S. Andrews,Azraf Anwar,Moritz E. Beber,Frank T. Bergmann,David Brooks,Lutz Brusch,Laurence Calzone,Kiri Choi,Joshua Cooper,John Detloff,Brian Drawert,Michel Dumontier,G. Bard Ermentrout,James R. Faeder,Andrew P. Freiburger,Fabian Frohlich,Akira Funahashi,Alan Garny,John H. Gennari,Padraig Gleeson,Anne Goelzer,Zachary Haiman,Jan Hasenauer,Joseph L. Hellerstein,Henning Hermjakob,Stefan Hoops,Jon C. Ison,Diego Jahn,Henry Jakubowski, Ryann Jordan,Matus Kalas,Matthias Koenig,Wolfram Liebermeister,Rahuman S. Malik Sheriff, Synchon Mandal,Robert McDougal,J. Kyle Medley,Pedro Mendes,Robert Mueller,Chris J. Myers,Aurelien Naldi,Tung V. N. Nguyen,David P. Nickerson,Brett G. Olivier,Drashti Patoliya,Loic Pauleve,Linda R. Petzold, Ankita Priya,Anand K. Rampadarath,Johann M. Rohwer,Ali S. Saglam,Dilawar Singh,Ankur Sinha,Jacky Snoep,Hugh Sorby,Ryan Spangler, Joern Starruss,Payton J. Thomas,David van Niekerk,Daniel Weindl,Fengkai Zhang,Anna Zhukova,Arthur P. Goldberg,James C. Schaff, Michael L. Blinov,Herbert M. Sauro, Ion I. Moraru,Jonathan R. Karr

NUCLEIC ACIDS RESEARCH（2022）

引用6浏览0引用

MASSpy: Building, Simulating, and Visualizing Dynamic Biological Models in Python Using Mass Action Kinetics

Zachary B. Haiman,Daniel C. Zielinski, Yuko Koike,James T. Yurkovich,Bernhard O. Palsson

PLOS COMPUTATIONAL BIOLOGY（2021）

引用14浏览0引用

Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks

Anand V. Sastry,Saugat Poudel,Kevin Rychel,Reo Yoo,Cameron R. Lamoureux,Siddharth Chauhan,Zachary B. Haiman,Tahani Al Bulushi,Yara Seif,Bernhard O. Palsson

biorxiv（2021）

引用14浏览0引用

Machine Learning Applied to Enzyme Turnover Numbers Reveals Protein Structural Correlates and Improves Metabolic Models

David Heckmann,Colton J. Lloyd,Nathan Mih,Yuanchi Ha,Daniel C. Zielinski,Zachary B. Haiman,Abdelmoneim Amer Desouki,Martin J. Lercher,Bernhard O. Palsson

Nature communications（2018）

引用130浏览0WOSNATURE引用

130

Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials

James T Yurkovich,Miguel A Alcantar,Zachary B Haiman,Bernhard O Palsson

PLOS COMPUTATIONAL BIOLOGY（2018）

引用3浏览0WOSEI引用

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