Tim Van Den Bossche - VIB, VIB UGent Ctr Med Biotechnol, B-9000 Ghent, Belgium

基本信息

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职业迁徙

个人简介

Tim Van Den Bossche is currently working as PhD student in the CompOmics lab of prof. Lennart Martens in the area of microbial community proteomics, commonly known as metaproteomics. In this lab, he is applying and tweaking Machine Learning algorithms to improve peptide identifications in metaproteomics experiments.

研究兴趣

论文共 49 篇作者统计合作学者相似作者

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Metaproteomics in the One Health Framework for Unraveling Microbial Effectors in Microbiomes

Robert Heyer,Maximilian Wolf,Dirk Benndorf,Sergio Uzzau,Jana Seifert,Lucia Grenga,Martin Pabst,Heike Schmitt,Bart Mesuere,Tim Van Den Bossche,Sven-Bastiaan Haange,Nico Jehmlich, Mariagrazia Di Luca,Manuel Ferrer,Sergio Serrano-Villar,Jean Armengaud, Helge Bode,Patrick Hellwig,Catherine Robbe Masselot,Renaud Léonard,Paul Wilmes

crossref（2025）

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Data-Independent Acquisition Mass Spectrometry As a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome

Andrew T Rajczewski,J Alfredo Blakeley-Ruiz, Annaliese Meyer,Simina Vintila,Matthew R McIlvin,Tim Van Den Bossche,Brian C Searle,Timothy J Griffin,Mak A Saito,Manuel Kleiner,Pratik D Jagtap

bioRxiv the preprint server for biology (2025)

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Metaproteomics Beyond Databases: Addressing the Challenges and Potentials of De Novo Sequencing

Tim Van Den Bossche,Denis Beslic, Sam van Puyenbroeck,Tomi Suomi,Tanja Holstein,Lennart Martens,Laura L Elo,Thilo Muth

Proteomicspp.e202400321-e202400321, (2025)

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Critical Assessment of MetaProteome Investigation 2 (CAMPI-2): Multi-laboratory Assessment of Sample Processing Methods to Stabilize Fecal Microbiome for Functional Analysis

Alessandro Tanca,Kay Schallert,Lucia Grenga,Samantha L. Peters,Marcello Abbondio, Laura De Diego, Maria Antonietta Deledda,Sven-Bastiaan Haange,Guylaine Miotello,Johan S. Saenz,Maximilian Wolf, Simon Devos,Guillermina Hernandez-Raquet, Jana Seifert,Paul Wilmes,Tim Van Den Bossche,Benoit J. Kunath, Robert Heyer, Nico Jehmlich, Dirk Benndorf, Robert L. Hettich,Jean Armengaud,Sergio Uzzau

biorxiv（2025）

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PathwayPilot: A User-Friendly Tool for Visualizing and Navigating Metabolic Pathways

Tibo Vande Moortele,Pieter Verschaffelt,Qingyao Huang,Nadezhda T. Doncheva,Tanja Holstein, Caroline Jachmann,Peter Dawyndt,Lennart Martens,Bart Mesuere,Tim Van Den Bossche

Molecular & Cellular Proteomicspp.100918, (2025)

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The Microbiologist’s Guide to Metaproteomics

Tim Van Den Bossche,Jean Armengaud,Dirk Benndorf, Jose Alfredo Blakeley-Ruiz, Madita Brauer, Kai Cheng,Marybeth Creskey,Daniel Figeys,Lucia Grenga, Timothy J Griffin, Céline Henry,Robert L Hettich,Tanja Holstein,Pratik D Jagtap, Nico Jehmlich,Manuel Kleiner,Benoit J Kunath, Xuxa Malliet,Lennart Martens,Subina Mehta,Bart Mesuere,Zhibin Ning,Alessandro Tanca,Sergio Uzzau,Pieter Verschaffelt, Jing Wang,Paul Wilmes,Xin Zhang, Leyuan Li

crossref（2025）

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Emergence and Global Spread of Mpox Clade Ib: Challenges and the Role of Wastewater and Environmental Surveillance

Ananda Tiwari, Thierry Kalonji, Taru Miller,Tim Van Den Bossche, Adriana Krolicka,Hypolite Muhindo-Mavoko,Patrick Mitashi, Marc Christian Tahita, Rolf Lood, Tarja Pitkänen,Vivi Maketa

The Journal of infectious diseases (2025)

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Boosting Metaproteomics Identification Rates and Taxonomic Specificity with MS2Rescore