Lydia A Krasilnikova - Broad Institute of Harvard, MIT

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Inferring Viral Transmission Pathways from Within-Host Variation

Ivan O A Specht,Brittany A Petros,Gage K Moreno,Taylor Brock-Fisher,Lydia A Krasilnikova, Mark Schifferli, Katherine Yang,Paul Cronan,Olivia Glennon,Stephen F Schaffner,Daniel J Park,Bronwyn L MacInnis,Al Ozonoff,Ben Fry,Michael D Mitzenmacher,Patrick Varilly,Pardis C Sabeti

medRxiv the preprint server for health sciences (2023)

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Multiplexed CRISPR-based Microfluidic Platform for Clinical Testing of Respiratory Viruses and Identification of SARS-CoV-2 Variants

Nicole L. Welch,Meilin Zhu,Catherine Hua,Juliane Weller,Marzieh Ezzaty Mirhashemi,Tien G. Nguyen,Sreekar Mantena,Matthew R. Bauer,Bennett M. Shaw,Cheri M. Ackerman,Sri Gowtham Thakku,Megan W. Tse,Jared Kehe,Marie-Martine Uwera,Jacqueline S. Eversley,Derek A. Bielwaski,Graham McGrath,Joseph Braidt,Jeremy Johnson,Felecia Cerrato,Gage K. Moreno,Lydia A. Krasilnikova,Brittany A. Petros,Gabrielle L. Gionet,Ewa King,Richard C. Huard,Samantha K. Jalbert,Michael L. Cleary,Nicholas A. Fitzgerald,Stacey B. Gabriel,Glen R. Gallagher,Sandra C. Smole,Lawrence C. Madoff,Catherine M. Brown,Matthew W. Keller,Malania M. Wilson,Marie K. Kirby,John R. Barnes,Daniel J. Park,Katherine J. Siddle,Christian T. Happi,Deborah T. Hung,Michael Springer,Bronwyn L. MacInnis,Jacob E. Lemieux,Eric Rosenberg,John A. Branda,Paul C. Blainey,Pardis C. Sabeti,Cameron Myhrvold

Nature medicine（2023）

引用107浏览0WOSNATURE引用

107

Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants( vol 28 , pg 1083 , 2022)

Nicole L. Welch,Meilin Zhu,Catherine Hua,Juliane Weller,Marzieh Ezzaty Mirhashemi,Tien G. Nguyen,Sreekar Mantena,Matthew R. Bauer,Bennett M. Shaw,Cheri M. Ackerman,Sri Gowtham Thakku,Megan W. Tse,Jared Kehe,Marie-Martine Uwera,Jacqueline S. Eversley,Derek A. Bielwaski,Graham McGrath,Joseph Braidt,Jeremy Johnson,Felecia Cerrato,Gage K. Moreno,Lydia A. Krasilnikova,Brittany A. Petros,Gabrielle L. Gionet,Ewa King,Richard C. Huard,Samantha K. Jalbert,Michael L. Cleary,Nicholas A. Fitzgerald,Stacey B. Gabriel,Glen R. Gallagher,Sandra C. Smole,Lawrence C. Madoff,Catherine M. Brown,Matthew W. Keller,Malania M. Wilson,Marie K. Kirby,John R. Barnes,Daniel J. Park,Katherine J. Siddle,Christian T. Happi,Deborah T. Hung,Michael Springer,Bronwyn L. Macinnis,Jacob E. Lemieux,Eric Rosenberg,John A. Branda,Paul C. Blainey,Pardis C. Sabeti,Cameron Myhrvold

NATURE MEDICINE (2023)

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Transmission from Vaccinated Individuals in a Large SARS-CoV-2 Delta Variant Outbreak

Katherine J. Siddle,Lydia A. Krasilnikova,Gage K. Moreno,Stephen F. Schaffner,Johanna Vostok,Nicholas A. Fitzgerald,Jacob E. Lemieux,Nikolaos Barkas,Christine Loreth,Ivan Specht,Christopher H. Tomkins-Tinch,Jillian S. Paull,Beau Schaeffer,Bradford P. Taylor,Bryn Loftness,Hillary Johnson,Petra L. Schubert,Hanna M. Shephard,Matthew Doucette,Timelia Fink,Andrew S. Lang,Stephanie Baez,John Beauchamp,Scott Hennigan,Erika Buzby,Stephanie Ash,Jessica Brown,Selina Clancy,Seana Cofsky,Luc Gagne,Joshua Hall,Rachel Harrington,Gabrielle L. Gionet,Katherine C. DeRuff,Megan E. Vodzak, Gordon C. Adams,Sabrina T. Dobbins,Sarah D. Slack,Steven K. Reilly,Lisa M. Anderson,Michelle C. Cipicchio,Matthew T. DeFelice,Jonna L. Grimsby,Scott E. Anderson,Brendan S. Blumenstiel,James C. Meldrim,Heather M. Rooke,Gina Vicente,Natasha L. Smith,Katelyn S. Messer,Faye L. Reagan,Zoe M. Mandese,Matthew D. Lee,Marianne C. Ray,Marissa E. Fisher,Maesha A. Ulcena,Corey M. Nolet,Sean E. English,Katie L. Larkin,Kyle Vernest,Sushma Chaluvadi,Deirdre Arvidson,Maurice Melchiono,Theresa Covell,Vaira Harik,Taylor Brock-Fisher,Molly Dunn,Amanda Kearns,William P. Hanage,Clare Bernard,Anthony Philippakis,Niall J. Lennon,Stacey B. Gabriel,Glen R. Gallagher,Sandra Smole,Lawrence C. Madoff,Catherine M. Brown,Daniel J. Park,Bronwyn L. MacInnis,Pardis C. Sabeti

Cell（2022）

引用42浏览0WOS引用

Phylogenetic Analysis of SARS-CoV-2 in Boston Highlights the Impact of Superspreading Events

Jacob E. Lemieux,Katherine J. Siddle,Bennett M. Shaw,Christine Loreth,Stephen F. Schaffner,Adrianne Gladden-Young,Gordon Adams,Timelia Fink,Christopher H. Tomkins-Tinch,Lydia A. Krasilnikova,Katherine C. DeRuff,Melissa Rudy,Matthew R. Bauer,Kim A. Lagerborg,Erica Normandin,Sinead B. Chapman,Steven K. Reilly,Melis N. Anahtar,Aaron E. Lin,Amber Carter,Cameron Myhrvold,Molly E. Kemball,Sushma Chaluvadi,Caroline Cusick,Katelyn Flowers,Anna Neumann,Felecia Cerrato,Maha Farhat,Damien Slater,Jason B. Harris,John A. Branda,David Hooper,Jessie M. Gaeta,Travis P. Baggett,James O'Connell,Andreas Gnirke,Tami D. Lieberman,Anthony Philippakis,Meagan Burns,Catherine M. Brown,Jeremy Luban,Edward T. Ryan,Sarah E. Turbett,Regina C. LaRocque,William P. Hanage,Glen R. Gallagher,Lawrence C. Madoff,Sandra Smole,Virginia M. Pierce,Eric Rosenberg,Pardis C. Sabeti,Daniel J. Park,Bronwyn L. MacInnis

Scienceno. 6529 (2021)

引用251浏览0WOS引用

251

SARS-CoV-2 Reinfection in a Liver Transplant Recipient

Christopher H. Tomkins-Tinch,Jennifer S. Daly,Adrianne Gladden-Young,Nicole Theodoropoulos, Michael P. Madaio, Neng Yu,Vijay K. Vanguri,Katherine J. Siddle,Gordon Adams,Lydia A. Krasilnikova, Babak Moeini,Adel Bozorgzadeh,Karl Simin,Jacob E. Lemieux,Jeremy Luban,Daniel J. Park,Bronwyn MacInnis,Pardis C. Sabeti,Stuart M. Levitz

Annals of internal medicine（2021）

引用12浏览0引用

Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts

Katherine J Siddle,Lydia A Krasilnikova,Gage K Moreno,Stephen F Schaffner,Johanna Vostok,Nicholas A Fitzgerald,Jacob E Lemieux,Nikolaos Barkas,Christine Loreth,Ivan Specht,Christopher H Tomkins-Tinch,Jillian Silbert,Beau Schaeffer,Bradford P Taylor,Bryn Loftness,Hillary Johnson,Petra L Schubert,Hanna M Shephard, Matthew Doucette,Timelia Fink,Andrew S Lang,Stephanie Baez,John Beauchamp,Scott Hennigan,Erika Buzby,Stephanie Ash,Jessica Brown,Selina Clancy,Seana Cofsky,Luc Gagne,Joshua Hall,Rachel Harrington,Gabrielle L Gionet,Katherine C DeRuff,Megan E Vodzak,Gordon C Adams,Sabrina T Dobbins,Sarah D Slack,Steven K Reilly,Lisa M Anderson,Michelle C Cipicchio,Matthew T DeFelice,Jonna L Grimsby,Scott E Anderson,Brendan S Blumenstiel,James C Meldrim,Heather M Rooke,Gina Vicente,Natasha L Smith,Katelyn S Messer,Faye L Reagan,Zoe M Mandese,Matthew D Lee,Marianne C Ray,Marissa E Fisher,Maesha A Ulcena,Corey M Nolet,Sean E English,Katie L Larkin,Kyle Vernest,Sushma Chaluvadi,Deirdre Arvidson,Maurice Melchiono,Theresa Covell,Vaira Harik,Taylor Brock-Fisher,Molly Dunn,Amanda Kearns,William P Hanage,Clare Bernard,Anthony Philippakis,Niall J Lennon,Stacey B Gabriel,Glen R Gallagher,Sandra Smole,Lawrence C Madoff,Catherine M Brown,Daniel J Park,Bronwyn L MacInnis,Pardis C Sabeti

medRxiv : the preprint server for health sciences (2021)

引用6浏览0WOS引用

Phylogenetic Analysis of SARS-CoV-2 in the Boston Area Highlights the Role of Recurrent Importation and Superspreading Events

Jacob E. Lemieux,Katherine J. Siddle,Bennett Shaw,Christine Loreth,Stephen F. Schaffner,Adrianne Gladden-Young,Gordon Adams,Timelia Fink,Christopher H. Tomkins-Tinch,Lydia A. Krasilnikova,Katherine C. DeRuff,Melissa Rudy,Matthew R. Bauer,Kim A. Lagerborg,Erica Normandin,Sinéad B. Chapman,Steven K. Reilly,Melis N. Anahtar,Aaron E. Lin,Amber Carter,Cameron Myhrvold,Molly Kemball,Sushma Chaluvadi,Caroline Cusick,Katelyn Flowers,Anna Neumann,Felecia Cerrato,Maha Farhat,Damien Slater,Jason B. Harris,John A. Branda,David C. Hooper,Jessie M. Gaeta,Travis P. Baggett,James J. O’Connell,Andreas Gnirke,Tami D. Lieberman,Anthony Philippakis,Meagan Burns,Catherine Brown,Jeremy Luban,Edward T. Ryan,Sarah E. Turbett,Regina C. LaRocque,William P. Hanage,Glen R. Gallagher,Lawrence C. Madoff,Sandra Smole,Virginia Pierce,Eric Rosenberg,Pardis C. Sabeti,Danny Park,Bronwyn L. Maclnnis

medRxiv (Cold Spring Harbor Laboratory) (2020)

引用42浏览0引用

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