Jeffrey B. Joy - Behavioural Ecology Research Group;Department of Biological Sciences;Simon Fraser University;Behavioural Ecology Research Group, Simon Fraser University

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Longitudinal Evolution of the HIV Effective Reproduction Number Following Sequential Expansion of Treatment As Prevention and Pre-Exposure Prophylaxis in British Columbia, Canada: a Population-Level Programme Evaluation

Viviane Lima,Jielin Zhu,Rolando Barrios,Junine Toy,Jeffrey B. Joy,Brian G. Williams,Reuben Granich,Zunyou Wu,Jason Wong,Julio S. G. Montaner

LANCET HIVno. 7 (2024): e461-e469

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Longitudinal Influenza A Virus Screening of Retail Milk from Canadian Provinces (Rolling Updates)

Hannah L. Wallace,Jordan Wight, Barbara Dowding, Mariana Baz Etchebarne, Louis Flamand,Tom Hobman,Francois Jean,Jeffrey B Joy,Andrew S. Lang,Craig McCormick,Ryan Noyce,Rodney S. Russell, Selena Sagan, Gabriela J. Rzeszutek, Mustafa S. Jafri,Isaac Bogoch,Jason Kindrachuk,Angela L. Rasmussen, the Pan-Canadian Milk Study Network

medrxiv（2024）

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A Simple Phylogenetic Approach to Analyze Hypermutated HIV Proviruses Reveals Insights into Their Dynamics and Persistence During Antiretroviral Therapy

Aniqa Shahid,Bradley R Jones,Maggie C Duncan,Signe MacLennan,Michael J Dapp,Mark H Kuniholm,Bradley Aouizerat,Nancie M Archin,Stephen Gange,Igho Ofotokun,Margaret A Fischl,Seble Kassaye,Harris Goldstein,Kathryn Anastos,Jeffrey B Joy,Zabrina L Brumme

Virus Evolution (2024)

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The Canadian VirusSeq Data Portal and Duotang: Open Resources for SARS-CoV-2 Viral Sequences and Genomic Epidemiology

Erin E. Gill,Baofeng Jia,Carmen Lia Murall,Raphael Poujol,Muhammad Zohaib Anwar,Nithu Sara John, Justin Richardsson, Ashley Hobb,Abayomi S. Olabode, Alexandru Lepsa,Ana T. Duggan,Andrea D. Tyler,Arnaud N'Guessan, Atul Kachru,Brandon Chan,Catherine Yoshida,Christina K. Yung,David Bujold,Dusan Andric,Edmund Su,Emma J. Griffiths,Gary Van Domselaar, Gordon W. Jolly, Heather K. E. Ward, Henrich Feher, Jared Baker,Jared T. Simpson, Jaser Uddin,Jiannis Ragoussis, Jon Eubank,Jorg H. Fritz,Jose Hector Galvez, Karen Fang,Kim Cullion, Leonardo Rivera,Linda Xiang,Matthew A. Croxen, Mitchell Shiell,Natalie Prystajecky,Pierre-Olivier Quirion,Rosita Bajari,Samantha Rich,Samira Mubareka,Sandrine Moreira,Scott Cain,Steven G. Sutcliffe,Susanne A. Kraemer, Yelizar Alturmessov,Yann Joly,Marc Fiume,Terrance P. Snutch, Cindy Bell,Catalina Lopez-Correa,Julie G. Hussin,Jeffrey B. Joy,Caroline Colijn,Paul M. K. Gordon,William W. L. Hsiao,Art F. Y. Poon,Natalie C. Knox,Melanie Courtot,Lincoln Stein,Sarah P. Otto,Guillaume Bourque,B. Jesse Shapiro,Fiona S. L. Brinkman

MICROBIAL GENOMICS（2024）

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Impact of Pre-Exposure Prophylaxis on HIV-1 Drug Resistance and Phylogenetic Cluster Growth in British Columbia, Canada

Angela McLaughlin,K. Junine Toy,Vincent Montoya,Paul Sereda, Jason Triggs,Mark Hull,Chanson J. Brumme,Rolando Barrios,Julio S. G. Montaner,Jeffrey B. Joy

crossref（2024）

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Longitudinal Screening of Retail Milk from Canadian Provinces Reveals No Detections of Influenza A Virus RNA (April-July 2024): Leveraging a Newly Established Pan-Canadian Network for Responding to Emerging Viruses

Hannah L. Wallace,Jordan Wight,Mariana Baz, Barbara Dowding, Louis Flamand,Tom Hobman, Francois Jean,Jeffrey B. Joy,Andrew S. Lang,Sonya Macparland,Craig Mccormick,Ryan Noyce,Rodney S. Russell,Selena M. Sagan, Jumari Snyman, Gabriela J. Rzeszutek, Mustafa S. Jafri,Isaac Bogoch,Jason Kindrachuk,Angela L. Rasmussen

CANADIAN JOURNAL OF MICROBIOLOGY (2024)

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Community Insights in Phylogenetic HIV Research: the CIPHR Project Protocol

Francois Cholette,Lisa Lazarus,Pascal Macharia,Laura H. Thompson, Samuel Githaiga,John Mathenge,Jeffrey Walimbwa, Irene Kuria, Silvia Okoth,Solomon Wambua, Harrison Albert,Peninah Mwangi, Joyce Adhiambo,Rosemary Kasiba, Esther Juma,Parinita Battacharjee,Joshua Kimani,Paul Sandstrom,Adrienne F. A. Meyers,Jeffrey B. Joy,Matthew Thomann,Paul J. McLaren,Souradet Shaw,Sharmistha Mishra,Marissa L. Becker,Lyle Mckinnon,Robert Lorway

GLOBAL PUBLIC HEALTHno. 1 (2023)

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Inferring Human Immunodeficiency Virus 1 Proviral Integration Dates with Bayesian Inference

Bradley R. Jones,Jeffrey B. Joy

MOLECULAR BIOLOGY AND EVOLUTIONno. 8 (2023)

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