基本信息
views: 46
Career Trajectory
Bio
Name and surname: Jan Šafář
Affiliation: Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic
Citizenship: Czech Republic
ORCID: 0000-0003-0197-1979
Education and academic degrees
1999 MSc., Masaryk University, Faculty of Sciences, Brno, General biology,
2004 Ph.D., Botany; Faculty of Sciences, Palacký University, Olomouc; Ph.D. thesis: „ BAC Library Construction in Plants”
Appointments
2003 – 2004 Postdoctoral Fellow, University of Arizona, Plant Sciences, Tucson, USA
2004 – 2010 Postdoctoral Fellow, Laboratory of Molecular Cytogenetics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic
2010 – 2017 Senior Researcher, Centre of Structural and Functional Genomics, Institute of Experimental Botany, Olomouc, Czech Republic
2017 – present Group leader, Centre of Structural and Functional Genomics, Institute of Experimental Botany, Olomouc, Czech Republic
2017 – present Head of Application Laboratory for Agricultural Research, Centre of Structural and Functional Genomics, Institute of Experimental Botany, Olomouc, Czech Republic
Management Experience
2017 – present Group leader, Centre of Structural and Functional Genomics, Institute of Experimental Botany, Olomouc, Czech Republic
2017 – present Head of Application Laboratory for Agricultural Research, Centre of Structural and Functional Genomics, Institute of Experimental Botany, Olomouc, Czech Republic
International Experience
2002 CIRAD, Montpellier, France. Construction and characterization Musa balbisiana BAC
library (4 month)
2002 Unité de Recherches en Génomique Végétale (URGV-INRA), Paris-Evry, France
Construction and characterization 3B chromosome-specific BAC library for Triticum
aestivum (2month)
2003 Unité de Recherches en Génomique Végétale (URGV-INRA), Paris-Evry, France.
Construction and characterization 1BS arm-specific BAC library for Triticum
aestivum (1month)
2003 - 2004 Department of Plant Sciences, University of Arizona, Tucson, USA. Physical mapping of barley genome using microarray technology (6 month)
Teaching and mentoring
2008-2012 Palacký University, Pedagogic faculty, Basic Genetics
2014- 2020 Palacký University, Faculty of Sciences, Practise in Genomics
2017- present Palacký University, Faculty of Sciences, semestral course “Transcriptomics and Gene anotation "
Thesis supervision: Bc. and MSc. - 8 (8 defended); Ph.D. - 3 (1 defended, 2 in progress).
Main research interests
Flowering time gene analysis in cereals; NGT, Foreign rDNA in barley species, Construction of large-insert DNA libraries in plants; Physical genome mapping;
Research grant awards
Principal investigator of four projects (Czech Science Foundation), total award 22.5 mil. CZK (equal to 0.9 mil. €)
Co-investigator of six projects (Czech Science Foundation), total award for IEB 19.4 mil CZK (equal to 800 thousand €)
Publication activity
55 original papers and reviews, 2 book chapters; WOS 63 entries; h-index 24, 2,720 citations (11.11.2022); https://www.webofscience.com/wos/author/record/G-1038-2014
Profiling records (since 2016)
Five selected publications:
1. International Wheat Genome Sequencing Consortium (IWGSC) (2018): Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science 361(6403):eaar7191. https://doi.org/10.1126/science.aar7191
2. Mahelka, V., Krak, K., Kopecký, D., Fehrer, J., Šafář, J., Bartoš, J., Hobza, R., Blavet, N., Blattner, F.R (2017).: Multiple horizontal transfers of nuclear ribosomal genes between phylogenetically distinct grass lineages. – PNAS 114: 1726-1731, 2017. https://doi.org/10.1111/tpj.15167
3. Mahelka, V., Krak, K., Fehrer, J., Caklová, P., Nagy Nejedlá, M., Čegan, R., Kopecký, D. and Šafář, J. (2021), A Panicum-derived chromosomal segment captured by Hordeum a few million years ago preserves a set of stress-related genes. Plant J, 105: 1141-1164. https://doi.org/10.1111/tpj.15167
4. Šafář J., Šimková H. and Doležel J. (2016).: Construction of BAC Libraries from Flow-Sorted Chromosomes, book chapter in Plant cytogenetics: Methods and Protocols, vol.:1429, 135-149, Ed(s): Kianian, SF and Kianian, PMA. https://doi.org/10.1007/978-1-4939-3622-9_11
5. Strejčková B, Milec Z, Holušová K, Cápal P, Vojtková T, Čegan R, Šafář J.: In-Depth Sequence Analysis of Bread Wheat VRN1 Genes. Int J Mol Sci. 2021 Nov 13;22(22):12284. https://doi.org/10.3390/ijms222212284.
International Projects:
1. 101094738: Promoting a Plant Genetic Resource Community for Europe (01/2023 – 06/2025); Horizon Europe (HORIZON-INFRA-2022-DEV-01) funding amount for IEB 80,750 €; co-investigator;
Invited lectures
The applicant has recently opportunity to be speaker at following conferences and symposia:
- PlantGen 2019, Novosibirsk, Russia, 2019: What we know about vernalization proces in wheat
-70. conference:Tagung der Vereinigung der Pflanzenzüchter und Saatgutkauf
Research Interests
Papers共 73 篇Author StatisticsCo-AuthorSimilar Experts
By YearBy Citation主题筛选期刊级别筛选合作者筛选合作机构筛选
时间
引用量
主题
期刊级别
合作者
合作机构
Martin Kovacik,Anna Nowicka,Jana Zwyrtkova,Beata Strejckova,Isaia Vardanega,Eddi Esteban,Asher Pasha,Katerina Kaduchova, Maryna Krautsova, Marie Cervenkova,Jan Safar,Nicholas J. Provart,Ruediger Simon,Ales Pecinka
PLANT CELLno. 7 (2024): 2512-2530
Lucie Horakova, Radim Cegan, Pavel Jedlicka, Pavla Navratilova,Hiroyuki Tanaka,Atsushi Toyoda, Takehiko Itoh, Takashi Akagi,Eiichiro Ono, Vojtech Hudzieczek,Josef Patzak,Jan Safar, Roman Hobza, Vaclav Bacovsky
biorxiv(2024)
biorxiv(2023)
New Phytologistno. 3 (2022): 1246-1259
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Author Statistics
#Papers: 72
#Citation: 5085
H-Index: 27
G-Index: 57
Sociability: 6
Diversity: 3
Activity: 16
Co-Author
Co-Institution
D-Core
- 合作者
- 学生
- 导师
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