Ben Raphael

基本信息

Career Trajectory

Bio

My research is focused on the design and application of computational methods to analyze large-scale biological data. My group uses diverse computatational approaches including combinatorial optimization, graph algorithms, machine learning, and statistical methods. Recent areas of emphasis include cancer evolution, network/pathway analysis of genetic variants, and structural variation in human and cancer genomes. Our algorithms have been used in multiple projects from The Cancer Genome Atlas (TCGA) and the International Cancer Genome Consortium (ICGC). I co-led the TCGA Pancreatic Adenocarcinoma project and the network analysis in the ICGC Pan-Cancer Analysis of Whole Genomes (PCAWG).

Education

Experience

Research Interests

Author Statistics

Co-Author

Co-Institution

D-Core

合作者
学生
导师

Fabio Vandin合作论文数

Department of Information Engineering, University of Padova23

Mark DM Leiserson合作论文数

Department of Computer Science, Brown University;Center for Computational Molecular Biology, Brown University17

Simone Zaccaria合作论文数

Department of Oncology, Cancer Institute, Faculty of Medical Sciences, University College London16

Li Ding合作论文数

Divisions of Hematology & Oncology, John T. Milliken Department of Medicine, School of Medicine, Washington University in St. Louis15

Hsin-Ta Wu合作论文数

Gryte Satas合作论文数

Michael C. Wendl合作论文数

Division of Oncology, John T. Milliken Department of Medicine, Washington University School of Medicine, St. Louis;Department of Mechanical Engineering and Materials Science, Washington University, St. Louis12

Anna Ritz合作论文数

Department of Computer Science, Brown University12

Uthsav Chitra合作论文数

Princeton University11

Pavel Pevzner合作论文数

Jacobs School of Engineering, University of California, San Diego;Center for Algorithmic Biotechnology, Saint Petersburg State University;NIH National Technology Center for Computational Mass Spectrometry;Howard Hughes Medical Institute11

Mohammed El-Kebir合作论文数

Department of Electrical and Computer Engineering, The Grainger College of Engineering, University of Illinois at Urbana-Champaign11

David A. Wheeler合作论文数

St. Jude Children's Research Hospital10

Eli Upfal合作论文数

Department of Computer Science, Brown University10

Ali Bashir合作论文数

Pacific Biosciences10

Layla Oesper合作论文数

Department of Computer Science, Brown University10

Joshua M Stuart合作论文数

Baskin School of Engineering, University of California Santa Cruz;Genomics Institute, University of California Santa Cruz10

Palash Sashittal合作论文数

University of Illinois9

Gad A. Getz合作论文数

Division of Medical Sciences, Harvard Medical School;Department of Pathology, Massachusetts General Hospital;Broad Institute of Harvard and MIT9

Michael S. Lawrence合作论文数

Harvard Medical School;Lawrence Laboratory, Mass General Cancer Center, Massachusetts General Hospital9

Colin Collins合作论文数

Department of Urologic Sciences, Faculty of Medicine, The University of British Columbia8

Henri Schmidt合作论文数

Computat Biol Program, Mem Sloan Kettering Canc Ctr7

Richard K. Wilson合作论文数

Institute for Genomic Medicine, Nationwide Children's Hospital;Ohio State University College of Medicine7

Chris Sander合作论文数

Dana–Farber Cancer Institute;Cell Biology Department, Harvard Medical School;Division of Medical Sciences, Harvard University7

Suzanne S. Sindi合作论文数

Div Appl Math, Brown Univ7

Matthew A. Wyczalkowski合作论文数

Washington University in St Louis7

Matthew A. Myers合作论文数

Gordon Robertson合作论文数

Jinghui Zhang (张京慧)合作论文数

Central South University6

Haochen Zhang合作论文数

Memorial Sloan Kettering Cancer Center6

Gordon Saksena合作论文数

Samuel W Brady合作论文数

St Jude Childrens Res Hosp, Dept Computat Biol, 332 N Lauderdale St, Memphis, TN 38105 USA6

Matthew A Reyna合作论文数

Department of Biomedical Informatics, Emory University6

Jüri Reimand合作论文数

Department of Medical Biophysics, Temerty Faculty of Medicine, University of Toronto6

Christine A. Iacobuzio-Donahue合作论文数

Center for Pancreatic Cancer Research, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center;The Christine Iacobuzio-Donahue Lab, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center6

Cong Ma合作论文数

Mulder Heather合作论文数

Mark A. Rubin合作论文数

Department for BioMedical Research, Faculty of Medicine, University of Bern;Rubin Lab, Weill Cornell Medicine6

Gunnar W. Klau合作论文数

Heinrich-Heine-Universitat Dusseldorf6

Elaine R. Mardis合作论文数

Departments of Pediatrics, College of Medicine, The Ohio State University;Institute for Genomic Medicine, Nationwide Children's Hospital6

Gordon Mills合作论文数

School of Medicine, Oregon Health Sciences University6

John Dick合作论文数

Department of Molecular Genetics, Temerty Faculty of Medicine, University of Toronto6

James R. Downing合作论文数

St. Jude Children’s Research Hospital6

Stanislav Volik合作论文数

Ron Zeira合作论文数

Blavatnik School of Computer Science, Tel Aviv University6

Xiaotu Ma合作论文数

Department of Computational Biology, St. Jude Children's Research Hospital;Comprehensive Cancer Center, St. Jude Children's Research Hospital6

Joshua Farris McMichael合作论文数

Genome Inst, Washington Univ6

Rehan Akbani合作论文数

Department of Bioinformatics and Computational Biology, Graduate School of Biomedical Sciences, University of Texas MD Anderson Cancer Center6

Pamela Paris合作论文数

School of Medicine, University of California, San Francisco;Biomarker Corporation6

Michael D McLellan合作论文数

The Genome Institute, Washington University School of Medicine;Genome Sequencing Center, Washington University School of Medicine6

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Professor

Papers共 207 篇Projects共 25 篇Author StatisticsCo-AuthorSimilar Experts