基本信息
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职业迁徙
个人简介
Computational Mass Spectrometry, Bioinformatics, Proteomics, Metabolomics, Natural Products, Therapeutic molecules, Big Data science, Crowdsourcing
Broadly defined, Bandeira's research interests are in bioinformatics and computational biology, with a special focus on computational mass spectrometry. He is particularly interested in algorithmic and statistical problems in proteomics and on how mass spectrometry instruments can be used to identify and quantify proteins, post-translational modifications, protein structure features and protein-protein interactions.
A significant part of his recent work stems from the novel Spectral Networks paradigm introduced by his research group - in a departure from previous approaches that interpret each spectrum in isolation, spectral networks algorithms derive consensus interpretations for groups of spectra from overlapping peptides. By focusing on the detection, assembly and consensus interpretation of multiple spectra from overlapping peptides it becomes possible to address new challenges such as: how to reconstruct a protein sequence given only MS/MS spectra of some of its subsequences? Find this answer and more right here!
Capsule Bio:
Bandeira earned a Ph.D. in computer science and bioinformatics from the University of California, San Diego. He holds a joint appointment with the Skaggs School of Pharmacy and Pharmaceutical Sciences. He earned a master's in applied artificial intelligence and a bachelor's in computer science from the New University of Lisbon.
研究兴趣
论文共 147 篇作者统计合作学者相似作者
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Gilbert S. Omenn,Sandra Orchard,Lydie Lane,Cecilia Lindskog,Charles Pineau,Christopher M. Overall,Bogdan Budnik,Jonathan M. Mudge,Nicolle H. Packer, Susan T. Weintraub,Michael H. A. Roehrl,Edouard Nice,Tiannan Guo,Jennifer E. Van Eyk,Uwe Völker,Gong Zhang,Nuno Bandeira,Ruedi Aebersold,Robert L. Moritz, Eric W. Deutsch
Journal of Proteome Research (2024)
Joshua Klein, Henry Lam,Tytus D Mak,Wout Bittremieux,Yasset Perez-Riverol,Ralf Gabriels,Jim Shofstahl,Helge Hecht, Pierre-Alain Binz, Shin Kawano,Tim Van Den Bossche,Jeremy Carver, Benjamin A Neely,Luis Mendoza,Tomi Suomi, Tine Claeys, Thomas Payne, Douwe Schulte, Zhi Sun,Nils Hoffmann, Yunping Zhu,Steffen Neumann, Andrew R Jones,Nuno Bandeira,Juan Antonio Vizcaíno, Eric W Deutsch
Analytical chemistryno. 46 (2024): 18491-18501
Paulo Wender P Gomes,Helena Mannochio-Russo,Robin Schmid,Simone Zuffa,Tito Damiani,Luis-Manuel Quiros-Guerrero,Andrés Mauricio Caraballo-Rodríguez,Haoqi Nina Zhao,Heejung Yang,Shipei Xing,Vincent Charron-Lamoureux,Desnor N Chigumba,Brian E Sedio,Jonathan A Myers,Pierre-Marie Allard, Thomas V Harwood,Giselle Tamayo-Castillo,Kyo Bin Kang,Emmanuel Defossez,Hector H F Koolen,Milton Nascimento da Silva,Consuelo Yumiko Yoshioka E Silva,Sergio Rasmann,Tom W N Walker,Gaëtan Glauser,José Miguel Chaves-Fallas,Bruno David,Hyunwoo Kim,Kyu Hyeong Lee, Myeong Ji Kim,Won Jun Choi,Young-Sam Keum,Emilly J S P de Lima,Lívia Soman de Medeiros,Giovana A Bataglion,Emmanoel V Costa,Felipe M A da Silva, Alice Rhelly V Carvalho,José Diogo E Reis,Sônia Pamplona,Eunah Jeong,Kyungha Lee,Geum Jin Kim,Yun-Seo Kil,Joo-Won Nam,Hyukjae Choi,Yoo Kyong Han,Si Young Park,Ki Yong Lee,Changling Hu, Yilun Dong,Shengmin Sang,Colin R Morrison,Ricardo Moreira Borges,Andrew Magno Teixeira,Seo Yoon Lee,Bum Soo Lee,Se Yun Jeong,Ki Hyun Kim,Adriano Rutz,Arnaud Gaudry, Edouard Bruelhart,Iris F Kappers,Rumyana Karlova,Mara Meisenburg, Roland Berdaguer,J Sebastián Tello,David Henderson,Leslie Cayola,S Joseph Wright,David N Allen,Kristina J Anderson-Teixeira,Jennifer L Baltzer,James A Lutz,Sean M McMahon,Geoffrey G Parker,John D Parker,Trent R Northen,Benjamin P Bowen,Tomáš Pluskal, J,Jeremy J Carver,Nuno Bandeira,Benjamin S Pullman,Jean-Luc Wolfender,Roland D Kersten,Mingxun Wang,Pieter C Dorrestein
bioRxiv the preprint server for biology (2024)
Simone Zuffa,Robin Schmid,Anelize Bauermeister,Paulo Wender P. Gomes,Andres M. Caraballo-Rodriguez,Yasin El Abiead,Allegra T. Aron,Emily C. Gentry,Jasmine Zemlin,Michael J. Meehan,Nicole E. Avalon,Robert H. Cichewicz,Ekaterina Buzun,Marvic Carrillo Terrazas,Chia-Yun Hsu,Renee Oles,Adriana Vasquez Ayala,Jiaqi Zhao,Hiutung Chu,Mirte C. M. Kuijpers,Sara L. Jackrel,Fidele Tugizimana,Lerato Pertunia Nephali,Ian A. Dubery,Ntakadzeni Edwin Madala,Eduarda Antunes Moreira,Leticia Veras Costa-Lotufo,Norberto Peporine Lopes,Paula Rezende-Teixeira,Paula C. Jimenez,Bipin Rimal,Andrew D. Patterson,Matthew F. Traxler,Rita de Cassia Pessotti,Daniel Alvarado-Villalobos,Giselle Tamayo-Castillo,Priscila Chaverri,Efrain Escudero-Leyva,Luis-Manuel Quiros-Guerrero,Alexandre Jean Bory,Juliette Joubert,Adriano Rutz,Jean-Luc Wolfender,Pierre-Marie Allard,Andreas Sichert,Sammy Pontrelli,Benjamin S. Pullman,Nuno Bandeira,William H. Gerwick,Katia Gindro,Josep Massana-Codina,Berenike C. Wagner,Karl Forchhammer,Daniel Petras,Nicole Aiosa,Neha Garg,Manuel Liebeke,Patric Bourceau,Kyo Bin Kang,Henna Gadhavi,Luiz Pedro Sorio de Carvalho,Mariana Silva dos Santos,Alicia Isabel Pérez-Lorente,Carlos Molina-Santiago,Diego Romero,Raimo Franke,Mark Brönstrup,Arturo Vera Ponce de León,Phillip Byron Pope,Sabina Leanti La Rosa,Giorgia La Barbera,Henrik M. Roager,Martin Frederik Laursen,Fabian Hammerle,Bianka Siewert,Ursula Peintner,Cuauhtemoc Licona-Cassani,Lorena Rodriguez-Orduña,Evelyn Rampler,Felina Hildebrand,Gunda Koellensperger,Harald Schoeny,Katharina Hohenwallner,Lisa Panzenboeck,Rachel Gregor,Ellis Charles O’Neill,Eve Tallulah Roxborough,Jane Odoi,Nicole J. Bale,Su Ding,Jaap S. Sinninghe Damsté,Xue Li Guan,Jerry J. Cui,Kou-San Ju,Denise Brentan Silva,Fernanda Motta Ribeiro Silva,Gilvan Ferreira da Silva,Hector H. F. Koolen,Carlismari Grundmann,Jason A. Clement,Hosein Mohimani,Kirk Broders,Kerry L. McPhail,Sidnee E. Ober-Singleton,Christopher M. Rath,Daniel McDonald,Rob Knight,Mingxun Wang,Pieter C. Dorrestein
NATURE MICROBIOLOGYno. 2 (2024): 336-345
Journal of Proteome Researchno. 2 (2024): 532-549
Eric W. Deutsch,Juan Antonio Vizcaino,Andrew R. Jones,Pierre-Alain Binz,Henry Lam,Joshua Klein,Wout Bittremieux,Yasset Perez-Riverol,David L. Tabb,Mathias Walzer,Sylvie Ricard-Blum,Henning Hermjakob,Steffen Neumann,Tytus D. Mak,Shin Kawano,Luis Mendoza,Tim Van Den Bossche,Ralf Gabriels,Nuno Bandeira,Jeremy Carver,Benjamin Pullman,Zhi Sun,Nils Hoffmann,Jim Shofstahl,Yunping Zhu,Luana Licata,Federica Quaglia,Silvio C. E. Tosatto,Sandra E. Orchard
JOURNAL OF PROTEOME RESEARCH (2023)
Eric W. Deutsch,Nuno Bandeira,Yasset Perez-Riverol,Vagisha Sharma,Jeremy J. Carver,Luis Mendoza,Deepti J. Kundu,Shengbo Wang,Chakradhar Bandla,Selvakumar Kamatchinathan,Suresh Hewapathirana,Benjamin S. Pullman,Julie Wertz,Zhi Sun,Shin Kawano,Shujiro Okuda,Yu Watanabe,Brendan MacLean,Michael J. MacCoss,Yunping Zhu,Yasushi Ishihama,Juan Antonio Vizcaino
Richard D. LeDuc,Eric W. Deutsch,Pierre-Alain Binz,Ryan T. Fellers,Anthony J. Cesnik,Joshua A. Klein,Tim Van den Bossche,Ralf Gabriels,Arshika Yalavarthi,Yasset Perez-Riverol,Jeremy Carver,Wout Bittremieux,Shin Kawano,Benjamin Pullman,Nuno Bandeira,Neil L. Kelleher,Paul M. Thomas,Juan Antonio Vizcaino
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作者统计
#Papers: 147
#Citation: 15631
H-Index: 46
G-Index: 118
Sociability: 7
Diversity: 3
Activity: 64
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