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个人简介
Modern genomic technologies make it relatively easy to generate rich data sets describing genome sequences, RNA expression, chromatin states, and many other aspects of the storage, transmission, and expression of genetic information. For many problems in genetics today, the limiting step is no longer in data generation, but in integrating, interpreting, and understanding the available data. Addressing these challenges requires expertise both in the practical arts of data analysis and in the theoretical underpinnings of statistics, computer science, and genetics.
My group focuses on a diverse collection of research questions in this interdisciplinary area, spanning applications in cancer biology, basic molecular biology, evolutionary genetics, infectious diseases, and agriculture. Over the years, our research has touched on topics including the identification of recombinant strains of HIV, the discovery of new human genes, the characterization of conserved regulatory elements in mammalian genomes, the identification of noncoding mutations important in cancer, and the discovery of ancient gene flow from humans to Neandertals. A general theme in our work is the development of precise mathematical models for the complex processes by which genomes evolve over time, and the use of these models, together with techniques from computer science and statistics, both to peer into the past, and to address questions of practical importance for human health. We collaborate closely with experimentalists in cancer biology, transcriptional regulation, plant breeding and many other areas.
研究兴趣
论文共 158 篇作者统计合作学者相似作者
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CANCER RESEARCHno. 3 (2024)
Ryan N Serio,Armin Scheben, Billy Lu, Domenic V Gargiulo,Lucrezia Patruno, Caroline L Buckholtz, Ryan J Chaffee, Megan C Jibilian, Steven G Persaud,Stephen J Staklinski, Rebecca Hassett, Lise M Brault,Daniele Ramazzotti, Christopher E Barbieri,Adam C Siepel,Dawid G Nowak
Cancer discovery (2024)
Benjamin Berube,Evan Ernst,Jonathan Cahn, Benjamin Roche,Cristiane de Santis Alves,Jason Lynn, Armin Scheben, Daniel Grimanelli,Adam Siepel,Jeffrey Ross-Ibarra, Jerry Kermicle,Robert A Martienssen
Natureno. 8029 (2024): 380-388
bioRxiv the preprint server for biology (2023)
bioRxiv : the preprint server for biology (2023)
Jenelys Ruiz Ortiz,Steven M. Lewis,Michael Ciccone,Deeptiman Chatterjee,Samantha Henry,Adam Siepel,Camila O. dos Santos
bioRxiv (Cold Spring Harbor Laboratory) (2023)
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Lukas F. K. Kuderna,Jacob C. Ulirsch, Sabrina Rashid,Mohamed Ameen,Laksshman Sundaram,Glenn Hickey,Anthony J. Cox,Hong Gao, Arvind Kumar,Francois Aguet,Matthew J. Christmas,Hiram Clawson,Maximilian Haeussler,Mareike C. Janiak,Martin Kuhlwilm,Joseph D. Orkin,Thomas Bataillon,Shivakumara Manu,Alejandro Valenzuela,Juraj Bergman, Marjolaine Rouselle,Felipe Ennes Silva,Lidia Agueda,Julie Blanc,Marta Gut,Dorien de Vries,Ian Goodhead,R. Alan Harris,Muthuswamy Raveendran,Axel Jensen,Idriss S. Chuma,Julie E. Horvath,Christina Hvilsom,David Juan,Peter Frandsen,Joshua G. Schraiber,Fabiano R. de Melo,Fabricio Bertuol,Hazel Byrne,Iracilda Sampaio,Izeni Farias,Joao Valsecchi, Malu Messias,Maria N. F. da Silva,Mihir Trivedi,Rogerio Rossi,Tomas Hrbek,Nicole Andriaholinirina,Clement J. Rabarivola,Alphonse Zaramody,Clifford J. Jolly,Jane Phillips-Conroy,Gregory Wilkerson,Christian Abee,Joe H. Simmons,Eduardo Fernandez-Duque,Sree Kanthaswamy,Fekadu Shiferaw,Dongdong Wu,Long Zhou,Yong Shao,Guojie Zhang,Julius D. Keyyu,Sascha Knauf,Minh D. Le,Esther Lizano,Stefan Merker,Arcadi Navarro,Tilo Nadler,Chiea Chuen Khor,Jessica Lee,Patrick Tan,Weng Khong Lim,Andrew C. Kitchener,Dietmar Zinner,Ivo Gut,Amanda D. Melin,Katerina Guschanski,Mikkel Heide Schierup,Robin M. D. Beck,Ioannis Karakikes,Kevin C. Wang,Govindhaswamy Umapathy,Christian Roos,Jean P. Boubli,Adam Siepel,Anshul Kundaje,Benedict Paten,Kerstin Lindblad-Toh,Jeffrey Rogers,Tomas Marques Bonet,Kyle Kai-How Farh
Natureno. 7996 (2023): 735-742
bioRxiv : the preprint server for biology (2023)
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作者统计
#Papers: 157
#Citation: 26924
H-Index: 58
G-Index: 133
Sociability: 7
Diversity: 3
Activity: 42
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