Complete Genome Sequences of Clostridioides Difficile Surveillance Isolates Representing the Top 10 Ribotypes from the Emerging Infections Program, United States, 2016.

Michelle Adamczyk,Nicholas Vlachos,Erin Breaker, Giulia Orazi,Ashley L. Paulick,Lori A. Rowe,Gillian Mcallister,Maria-Jose Machado,Lauren Korhonen,Alice Y. Guh,J. Kamile Rasheed,Maria Karlsson,Susannah L. Mckay,Joseph D. Lutgring,Amy S. Gargis

MICROBIOLOGY RESOURCE ANNOUNCEMENTS（2024）

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摘要

Ten Clostridioides difficile isolates representing the top 10 ribotypes collected in 2016 through the Emerging Infections Program underwent long-read sequencing to obtain high-quality reference genome assemblies. These isolates are publicly available through the CDC & FDA Antibiotic Resistance Isolate Bank.

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关键词

Clostridioides difficile,long-read sequencing,whole-genome sequencing,extrachromosomal elements

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