Deep Sequencing Reveals A Divergent Ugandan Cassava Brown Streak Virus Isolate From Malawi

Willard Mbewe,Stephan Winter,Settumba Mukasa,Fred Tairo,Peter Sseruwagi,Joseph Ndunguru,Siobain Duffy

MICROBIOLOGY RESOURCE ANNOUNCEMENTS（2017）

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摘要

Illumina sequencing of RNA from a cassava cutting from northern Malawi produced a genome of Ugandan cassava brown streak virus (UCBSV-MW-NB7_2013). Sequence comparisons revealed stronger similarity to an isolate from nearby Tanzania (93.4% pairwise nucleotide identity) than to those previously reported from Malawi (86.9 to 87.0%).

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cassava,malawi,deep sequencing

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