369 Concurrent neoantigen vaccination enhances the antitumor effect of dysfunctional T cells during cell therapy

Background

Adoptive cell therapies (ACT) utilizing neoantigen-specific T cells represents a promising approach to treat metastatic solid tumors.^1–3 Multiple studies have demonstrated that antitumor tumor infiltrating lymphocytes (TIL) are highly enriched in dysfunctional T cell subsets defined by the expression of the marker CD39.^4–6 We previously showed that response to TIL-ACT administered to metastatic melanoma patients was mediated by a small pool of CD39- stem-like T cells, while ACT due to CD39+ CD69+ dysfunctional T cells do not mediate tumor regressions.⁶ Here, we sought to evaluate if concurrent vaccination can enhance the poor antitumor response due to ACT containing largely dysfunctional T cells.

Methods

We repeatedly stimulated Pmel murine T cells and subsequently isolated CD39+ CD69+ dysfunctional T cells (DP-Pmel), and less-dysfunctional CD39l^ow T cells targeting the hgp100^KVP-mutated neoepitope for ACT against large established vascularized murine tumor models.^{6 7} We investigated the synergistic effect of multiple neoantigen vaccine modalities during ACT using these two T cell subsets. We studied the mechanisms of vaccine-mediated rescue and investigated post-ACT phenotype and dynamics of transferred T cells. Lastly, we studied the phenotypic states of transferred TIL and tracked the persistence of GP100 targeting TIL clonotypes in a human melanoma patient who responded to ACT only after receiving concurrent fowlpox GP100 vaccine.⁸

Results

Intravenously administered vaccinia-virus expressing hgp100^KVP-neoepitope (VACV^KVP+DP-Pmel), or anti-CD40 with hgp100^KVP-neopeptide administration (αCD40^KVP+DP-Pmel) rescued the poor antitumor effect of dysfunctional DP-Pmel in neoantigen tumor models (figure 1). Mechanistically, VACV^KVP+DP-Pmel rescue was contingent on host antigen presentation and expression of neoepitope in the vaccine backbone. Vaccine rescue of DP-Pmel was impacted by host B7.1/B7.2 blockade while αCD40^KVP+DP-Pmel was unimpacted. Relative to DP-Pmel ACT alone, VACV^KVP+DP-Pmel ACT that mediated tumor regression was associated with a significant persistence of transferred dysfunctional DP-Pmel T cells in spleen (12-fold), draining lymph nodes (3-fold), and in tumor (2.5-fold). In a human melanoma patient who only responded to TIL-ACT after concurrent GP100 vaccine administration, TIL infusion product contained > 93% CD39+ dysfunctional antitumor GP100-TIL with an increased persistence of transferred GP100 TIL clones only after concurrent fowplox-GP100 vaccine administration, suggesting the antitumor rescue effect of vaccine on largely dysfunctional TIL infusion rather than denovo vaccine induced T cell responses.

Conclusions

ACT using terminally dysfunctional antitumor T cells is rescuable by a neoantigen vaccine in murine models and may be relevant to ACT targeting human neoantigens. Mechanisms behind the rescue of effect of neoantigen vaccine during dysfunctional T cell ACT is ongoing.

Acknowledgements

We thank the Surgery Branch TIL Laboratory and clinical team for generating TIL, and patients enrolled in our clinical protocols. This work used the computational resources of the NIH HPC Biowulf cluster (http://hpc.nih.gov). We also thank NIDAP for providing additional computational support and the CCR Genomics Core for next-generation sequencing support.

References

Parkhurst, et al. Unique neoantigens arise from somatic mutations in patients with gastrointestinal cancers, Cancer Discovery, 2020. Zacharakis, et al. Breast cancers are immunogenic: immunologic analyses and a phase II pilot clinical trial using mutation-reactive autologous lymphocytes. 2022. Tran, et al. T-cell transfer therapy targeting mutant KRAS in cancer, NEJM, 2016. Simoni, et al. Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates, Nature, 2018 Duhen, et al. Co-expression of CD39 and CD103 identifies tumor-reactive CD8 T cells in human solid tumors, Nature Communications, 2018 Krishna S, et al. Stem-like CD8 T cells mediate response of adoptive cell immunotherapy against human cancer. Science 2020. Hanada, et al. An effective mouse model for adoptive cancer immunotherapy targeting neoantigens, JCI Insight 2019. Smith, et al. Impact of a recombinant fowlpox vaccine on the efficacy of adoptive cell therapy with tumor infiltrating lymphocytes in a patient with metastatic melanoma, Journal of Immunotherapy 2009.

Ethics Approval

All mice experiments utilizing tumors were implanted on mice was approved under the Institutional Review Board, NIH, animal protocol number SB 194. Human TIL samples used in this study were obtained from patients enrolled on NCT00068003 and NCT00001823 NIH clinical protocols, both approved by the institution review board of the National Cancer Institute. Informed consent was obtained and documented in accordance with the Declaration of Helsinki.

Consent

Human TIL samples used in this study were obtained from patients enrolled on NCT00068003 and NCT00001823 NIH clinical protocols, both approved by the institution review board of the National Cancer Institute. Informed consent was obtained and documented in accordance with the Declaration of Helsinki.