Optimization of Execution Parameters of Moldable Ultrasound Workflows Under Incomplete Performance Data

Complex ultrasound workflows calculating the outcome of ultrasound procedures such as neurostimulation, tumour ablation or photoacoustic imaging are composed of many computational tasks requiring high performance computing or cloud facilities to be computed in a sensible time. Most of these tasks are written as moldable parallel programs being able to run across various numbers of compute nodes. The number of compute nodes assigned to particular tasks strongly affects the overall execution and queuing times of the whole workflow (makespan) as well as the total computational cost. This paper employs a genetic algorithm searching for a good resource distribution over the particular tasks, and a cluster simulator evaluating the makespan and cost of the candidate execution schedules. Since the exact execution time cannot be measured for every possible combination of the task, input data size, and assigned resources, several interpolation techniques are used to predict the task duration for a given amount of compute resources. The best execution schedules are eventually submitted to a real cluster with a PBS scheduler to validate the whole technique. The experimental results confirm the proposed cluster simulator corresponds to a real PBS job scheduler with a sufficient fidelity. The investigation of the interpolation techniques showed that incomplete performance data can successfully be completed by linear and quadratic interpolations keeping the maximum mean error below 10%. Finally, the paper introduces a user defined parameter instructing the genetic algorithm to prefer either the makespan or cost, or find a suitable trade-off.