TahcoRoll: fast genomic signature profiling via thinned automaton and rolling hash.

Chelsea J-T Ju,Jyun-Yu Jiang,Ruirui Li,Zeyu Li,Wei Wang

Medical review (Berlin, Germany)（2021）

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摘要

The single-thread version of TahcoRoll is as efficient as the eight-thread version of the state-of-the-art, JellyFish, while the eight-thread TahcoRoll outperforms the eight-thread JellyFish by at least four times.

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关键词

Aho–Corasick algorithm,genome sequencing,k-mers,multiple pattern matching,rolling hash

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