SENMAP: A Convolutional Neural Network Architecture for Curation of LTR-RT Libraries from Plant Genomes

Simon Orozco-Arias,Mariana S. Candamil-Cortés,Estiven Valencia-Castrillón,Paula A. Jaimes,Nicolas Tobon Orozco, Maradey Arias-Mendoza,Reinel Tabares-Soto,Romain Guyot,Gustavo Isaza

2021 IEEE 2nd International Congress of Biomedical Engineering and Bioengineering (CI-IB&BI)（2021）

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摘要

Transposable elements (TEs) are specific structures of the genome of species, which can move from one location to another. For that reason, they can cause mutations or changes that can be negative, such as the appearance of diseases, or beneficial, such as participating in fundamental roles in the evolution of genomes and genetic diversity. Long Terminal Repeat retrotransposons (LTR-RT) are the mo...

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关键词

Curation,nested insertions,LTR retrotransposons,deep neural network,convolutional neural network

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