Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Martin Raden,Syed M Ali, Omer S Alkhnbashi,Anke Busch, Fabrizio Costa,Jason A Davis, Florian Eggenhofer,Rick Gelhausen, Jens Georg,Steffen Heyne, Michael Hiller,Kousik Kundu, Robert Kleinkauf,Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi,Andreas S Richter, Sebastian Will,Joachim Wolff, Patrick R Wright,Rolf Backofen

Nucleic acids research(2018)

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摘要
The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms. The services are freely available at http://rna.informatik.uni-freiburg.de.
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