Optimizing high performance computing workflow for protein functional annotation

Concurrency and Computation: Practice & Experience(2014)

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摘要
Functional annotation of newly sequenced genomes is one of the major challenges in modern biology. With modern sequencing technologies, the protein sequence universe is rapidly expanding. Newly sequenced bacterial genomes alone contain over 7.5 million proteins. The rate of data generation has far surpassed that of protein annotation. The volume of protein data makes manual curation
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关键词
psu,cog,XSEDE,BLAST,psi-blast,COG,hspp-blast,sequence similarity,data-enabled life sciences,xsede,protein sequence universe,petascale,computational bioinformatics,science gateways,protein annotation,blast,HSPp-BLAST,PSI-BLAST,PS
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